Pairwise Alignments

Query, 1155 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1279 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  213 bits (543), Expect = 6e-59
 Identities = 162/573 (28%), Positives = 265/573 (46%), Gaps = 81/573 (14%)

Query: 465  ELSQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENAEGNLSEEQ 524
            E++QA+   +A A       + K++FLANMSHE+RTP+N+ + +  L  +    +L E Q
Sbjct: 521  EMAQAKALAEAAA-------QAKADFLANMSHEIRTPMNAVIGMTHLALKT---DLDERQ 570

Query: 525  VKFAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKG 584
             ++   I  +   LL +INDILD +K EAGKL +      +E+++E +  +    A  KG
Sbjct: 571  REYLRKIQHSSQHLLGIINDILDFSKSEAGKLHIEQIDFDLEKVLEDVSSLMSERATSKG 630

Query: 585  LAFEVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTERGQVSMNVSFQADSG----IVF 640
            L F +++  +VP  L  D  R+ Q+L N  SNA+KFTERG+V+++V  + D G    + F
Sbjct: 631  LEFVIEMADEVPRHLVGDPLRIGQVLINYASNAVKFTERGEVAIHVGLEEDQGQEVLLRF 690

Query: 641  AVRDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPG 700
            AV DTGIGI A +   +F +F Q D ++ R+YGGTGLGL I++ LA L+GGQ+  +S PG
Sbjct: 691  AVHDTGIGIKAGELPTLFNSFQQADSSTTRKYGGTGLGLVIAKRLAELMGGQVGAESEPG 750

Query: 701  QGSVFSLILPERYAAEAEDVEPQSLRPAVDALPPAPQAPLAAAVTRPAPAFADDRERAPF 760
            +GS F        ++ A               PP P                        
Sbjct: 751  RGSTFWFTARLGRSSNAR-----------HRAPPRPD----------------------L 777

Query: 761  DTRCILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELAAQYIP--------DAILL 812
             TR +LV++D  +   ++ D+   + +        D G    A+           D + L
Sbjct: 778  RTRRLLVVDDHDHARDVVCDMLRSMSFQ---VSDTDSGNRCLAELQRASAAGEPYDIVFL 834

Query: 813  DMRLPDHSGLTVLQRLKEQASTRHIPVHIISVEDRVEAAMHMGAVG------YAVKPTSR 866
            D ++P+  GL   + ++     +   V +I+   R E A   G  G        +KP S 
Sbjct: 835  DWQMPEMDGLATAREIRRLELPQPPLVLMITAYGRDELARSAGESGLQGIEEILIKPVSP 894

Query: 867  EELKEVFARL--------EAKLTQKLK--------HILLVEDDDLQRESIARLIGDDDVE 910
             +L     R+         A   + L          +LLVED+ L +E  +  +   ++ 
Sbjct: 895  SQLFNTVMRILDHEDGPHSAADPEALPDLAPLAGLRVLLVEDNQLNQEVASEFLAGANMV 954

Query: 911  ITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGNELLKRMTAEDIRAFPPVIVYTGRNLT 970
            +        AL  +RQ  YD +++D+++P M G    + +  +   A  P++  T   + 
Sbjct: 955  VDVADDGASALEKVRQQRYDVILMDMQMPVMDGIAATREIRRQFPAAVLPILAMTANAME 1014

Query: 971  REEEADLLKYSRSIIIKGARSPERLLDEVTLFL 1003
            ++ E  L       I K    P  LL ++  +L
Sbjct: 1015 QDRERCLAAGMNDHIAKPV-DPRDLLGKLLKWL 1046



 Score =  112 bits (279), Expect = 2e-28
 Identities = 83/275 (30%), Positives = 138/275 (50%), Gaps = 14/275 (5%)

Query: 883  KLKHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQ-----NIYDCMIIDLK 937
            + + +L+V+D D  R+ +  ++     +++        LA L++       YD + +D +
Sbjct: 778  RTRRLLVVDDHDHARDVVCDMLRSMSFQVSDTDSGNRCLAELQRASAAGEPYDIVFLDWQ 837

Query: 938  LPDMLGNELLKRMTAEDIRAFPPVIVYT--GRN-LTREEEADLLKYSRSIIIKGARSPER 994
            +P+M G    + +   ++   P V++ T  GR+ L R      L+    I+IK   SP +
Sbjct: 838  MPEMDGLATAREIRRLELPQPPLVLMITAYGRDELARSAGESGLQGIEEILIKPV-SPSQ 896

Query: 995  LLDEVTLFLHKVESQLSNERQRMLKTARSRDKVFEGRKVLLVDDDVRNIFALTSALEHKG 1054
            L + V   L   +   S      L           G +VLLV+D+  N    +  L    
Sbjct: 897  LFNTVMRILDHEDGPHSAADPEALPDLAP----LAGLRVLLVEDNQLNQEVASEFLAGAN 952

Query: 1055 AIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDGFEATRLIRQQPRWRKLPIIAVTAK 1114
             +V++  +G  A+E++ Q    D++LMD+ MP MDG  ATR IR+Q     LPI+A+TA 
Sbjct: 953  MVVDVADDGASALEKVRQQR-YDVILMDMQMPVMDGIAATREIRRQFPAAVLPILAMTAN 1011

Query: 1115 AMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWL 1149
            AM+ D++RCL AG ND++AKP+D   L   +  WL
Sbjct: 1012 AMEQDRERCLAAGMNDHIAKPVDPRDLLGKLLKWL 1046