Pairwise Alignments

Query, 408 a.a., Response regulator/sensor histidine kinase from Pseudomonas putida KT2440

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  121 bits (303), Expect = 2e-31
 Identities = 90/266 (33%), Positives = 143/266 (53%), Gaps = 37/266 (13%)

Query: 147  EQELLLSQLQVARCELEHAVRMRDDFMSIVSHEVRTPLNGLI------LETQLRKMHLAR 200
            E +LL  +L VA+ E + A + + DF++ +SHE+RTP+N +I      L+TQL K     
Sbjct: 1018 ELKLLSDELLVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDK----- 1072

Query: 201  GNLDAFSVDKLQAMVERDERQINSLIRLVEDMLDVSRIRTGKLSLRPKLFDLGQLVRGLV 260
                     K +  +E+ ER   SL+ ++ D+LD S+I  GKL +    F L  ++  L 
Sbjct: 1073 ---------KQKNYLEKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLS 1123

Query: 261  ENFTAQAMALETHIELQRCEA------LKGEWDEFRIEQVVANLLSNAMRYGERNPV--Q 312
            + F+ +  A +  IEL    A      L G  D  R+ QV+ NL++NA+++ ER  V   
Sbjct: 1124 DMFSER--AAQKQIELLFAVAPNVPRHLLG--DPLRLGQVLINLMNNAIKFTERGEVLLS 1179

Query: 313  VRVFEQGG---MAWVQVQDHGIGISAANQQRIFQQFER--VAAQQASGGLGLGLYISEQI 367
            + + EQ     +    V+D GIG++   Q ++F+ F +   +  +  GG GLGL IS+Q+
Sbjct: 1180 LSLVEQQNDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQL 1239

Query: 368  VQAHGGRIQVESEEGKGATFTLQLPL 393
            V+  GG I VES+ G G+TF   + L
Sbjct: 1240 VELMGGSIGVESQLGHGSTFFFTVKL 1265



 Score = 40.8 bits (94), Expect = 3e-07
 Identities = 22/104 (21%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 9    LLIVDDLPENLLALDALIQGEDREVHQAQSAEAALSLLLEHEFALAILDVQMPGMNGFEL 68
            +L+ DD       +   ++     V   +S + A+    + E+A+A++D +MP ++G E 
Sbjct: 1284 ILVADDNATARDIMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLDGIET 1343

Query: 69   AELMRGTDKTKHIPIVFVSAAGREMNYAFKGYESGAVDFLHKPL 112
            A+ ++   +TK+ P + + +A    ++  +  + G   ++ KP+
Sbjct: 1344 AKQIK--QQTKNAPRILMVSAHANQDFLTQIEQLGLAGYISKPI 1385



 Score = 40.4 bits (93), Expect = 4e-07
 Identities = 20/81 (24%), Positives = 43/81 (53%)

Query: 8    KLLIVDDLPENLLALDALIQGEDREVHQAQSAEAALSLLLEHEFALAILDVQMPGMNGFE 67
            ++L+V+D   NL      ++     +  A + + AL  L +  F L ++D QMP M+G++
Sbjct: 1425 RILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGYQ 1484

Query: 68   LAELMRGTDKTKHIPIVFVSA 88
              + +R   +   +P++ ++A
Sbjct: 1485 ATKAIRQRPELAQLPVIAMTA 1505