Pairwise Alignments

Query, 362 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 355 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score =  223 bits (567), Expect = 8e-63
 Identities = 123/327 (37%), Positives = 185/327 (56%), Gaps = 2/327 (0%)

Query: 5   DSVAVYFLNAMLHALRDTPAERDAQLLAVGIAPQLLDQPLARVPAKAFAQLWLALIQRLD 64
           DS++V  +   L          +  L  +G+ P  L  P  R+  + ++QLWL L +  D
Sbjct: 21  DSISVRLVAEALLGFVGPRLSGEHLLEKIGLDPACLQDPDGRMDVRDYSQLWLRLARHFD 80

Query: 65  DEFFGLDSHGMPLGSFALICRGLILEPNLEKALRQCMGGFGLFLRDLRGSLTVRGGRAVI 124
           DEFFG+D   +  GSF  + R  + +P LEKAL   +   GL L +LRG L      A +
Sbjct: 81  DEFFGMDPRRLRSGSFVFLSRSCLQQPTLEKALVHALEFLGLGLENLRGKLIRSQSLAEV 140

Query: 125 SVQSNIADPLTRVYAEETYLVLMIGMLCWLAGRRIAIDRTELAVSRPAQEDDL-LLWGPD 183
            ++   A+P  R +   T+ +L+ G+ CWL GRRI +   EL  + P   DD  +++  +
Sbjct: 141 VLRERNAEP-ARAFCYFTFWMLLHGLACWLVGRRIPLLAVELRCAEPDYTDDYRVMFSDN 199

Query: 184 LRLGSGRTEVEFDSAYLRLPVVQDRAALKTFLRSAPQGLVIRFRNQNGLVAEVYRHLRAL 243
           LR G   T + F +  L LP+ +  A L+ FL  AP  +++R+R+ + L + + +HLR+L
Sbjct: 200 LRFGRPSTRIIFAAEVLDLPIRRSEAELRAFLAEAPANILVRYRDHSSLASRIKQHLRSL 259

Query: 244 RYGQWPTLAALAQQQGISASTFRRQLEREGRSYQQIKDEVRRAMAFERLREGALSIAEIA 303
              +WP    LAQ   ISAST RR+L   G+ YQ IKD +R+ MA E L + A+S  EIA
Sbjct: 260 PAERWPDSETLAQTLCISASTLRRRLAEAGQPYQAIKDGLRQEMATEWLADAAISYGEIA 319

Query: 304 EQAGFQEPSAFHRAFKKWTGQSPGSYR 330
           E+ GF + S+F++AF+KWTG +PG YR
Sbjct: 320 ERLGFADVSSFYKAFRKWTGINPGHYR 346