Pairwise Alignments

Query, 362 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 343 a.a., helix-turn-helix domain containing protein, AraC type from Marinobacter adhaerens HP15

 Score =  160 bits (404), Expect = 6e-44
 Identities = 108/328 (32%), Positives = 162/328 (49%), Gaps = 5/328 (1%)

Query: 6   SVAVYFLNAMLHALRDTPAERDAQLLAVGIAPQLLDQPLARVPAKAFAQLWLALIQRLDD 65
           +V+ +F+ A L        +    L   GI+P LL   +ARV +  F+ L   L  R+ D
Sbjct: 9   TVSKHFVQAALGGAERLGFDTREMLREAGISPDLLRIEMARVSSDQFSHLMQVLWNRMGD 68

Query: 66  EFFGLDSHGMPLGSFALICRGLILEPNLEKALRQCMGGFGLFLRDLRGSLTVRGGRA--V 123
           EF GL       G+FA +C  +I  PNLE   RQ      LF   +   L +   +A  V
Sbjct: 69  EFMGLGPRRARTGTFATMCALVIDCPNLESVYRQAFQFSRLFEPMVSMELEIGEDKARLV 128

Query: 124 ISVQSNIADPLTRVYAEETYLVLMIGMLCWLAGRRIAIDRTELAVSRPAQEDDLL-LWGP 182
             ++  I DP    +  E+ LV+   +  WL G+ I +++ E    RP   D+   ++  
Sbjct: 129 ARMEGEINDP--SFFLRESILVIWHRLGSWLIGQPIELEKAEFDYPRPPHGDEYRHIFHC 186

Query: 183 DLRLGSGRTEVEFDSAYLRLPVVQDRAALKTFLRSAPQGLVIRFRNQNGLVAEVYRHLRA 242
            L   S R  + FD  +L  PV++D+  ++ FL+++P  L+ R    N     +   +  
Sbjct: 187 PLAFESDRIALTFDKRFLSAPVIRDKPEMRQFLKTSPADLLSRPDESNTFTGRIRALIGR 246

Query: 243 LRYGQWPTLAALAQQQGISASTFRRQLEREGRSYQQIKDEVRRAMAFERLREGALSIAEI 302
                 P    +A +   S  T RR+L++E  S+Q+IKD +RR MA   L    L I +I
Sbjct: 247 DFSKPLPDFEWIAAELHTSPQTLRRRLKQENTSFQEIKDLLRRDMAIYYLSRQDLPINDI 306

Query: 303 AEQAGFQEPSAFHRAFKKWTGQSPGSYR 330
           A + GF EPS FHRAFKKWTG +PG+YR
Sbjct: 307 AAKVGFTEPSTFHRAFKKWTGVTPGAYR 334