Pairwise Alignments

Query, 819 a.a., putative ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  314 bits (804), Expect = 1e-89
 Identities = 255/837 (30%), Positives = 407/837 (48%), Gaps = 63/837 (7%)

Query: 10  ALLSHWRRHRVQCFSIFTGLWLATALWTGVQALNSQARSDYARASAVLTGPLQAQLIARN 69
           ALL H+RR+ +Q   ++ GL L  +L  GV A+N  AR  Y     + + PL  ++ +++
Sbjct: 27  ALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLPYRIRSKH 86

Query: 70  -GERFDQALYVQLRRLGWAVSPVLEGRLRLPGEPARSVRLIGIEPLSL------PPASSI 122
              +  Q LY+QLRR G+      +   R        + L GI+P++L       P +  
Sbjct: 87  IANKIPQGLYIQLRRDGFQQCVPFDD-YRFSTTSGLDLILQGIDPVALLSIDNGKPLAQQ 145

Query: 123 AGVQVQAFDLQAFVGSPGQAWVGPDTLRQLNTSPGSPTRDSEGQLLPPMVLQP--ALAPG 180
           +G+Q+        +  P    V  +  +  +   G     ++G  L P+V+     +   
Sbjct: 146 SGLQL--------MNPPYPVMVSQELAKLQDWQEGDYIALTDGSQLGPIVIDRHNQVTGM 197

Query: 181 VIVVDIGHAQTLLNAPGQLSRLLLADTPGPLPADIARYLELQP------RQDDGGLQRLT 234
            +V D+   + L    G L+ +  AD P   PA + +  +  P      R     L+ LT
Sbjct: 198 RVVADLSLVRMLKKGSG-LTVIACADMP---PAKLDKLKKSLPNGLTLTRSTRSELESLT 253

Query: 235 DSFHLDLTALGLLAFVVGLFIAHAAIGLALEQRRGLIRNLRACGVSLKTLLCALVLELGL 294
            +FHL+LTA+G+LAF+VG+FI + A+ L++ QR+ L+  LR  GV+   L  AL++EL +
Sbjct: 254 QAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGWQLAKALLIELLV 313

Query: 295 FAALGGLAGVASGYALAAWLLPDVAASLRGLYGAQVAGTLSLPAGWWLLGVLVSVLGALL 354
              +  + G   G  LA  L+P VA+SL  LY A V     L  GW       S+L ALL
Sbjct: 314 LVLVSWVCGNVLGLLLANQLIPSVASSLGYLYNANV----DLAIGWDWSWSSYSLLMALL 369

Query: 355 AGLESVMRAARLPLLALAQPQAWRLAQ--------GPWLQRQALLAGLLLLLALGCGVFG 406
           A   S       PL+ L + Q  RL+         G   + QALLA  L + A+      
Sbjct: 370 AAFAS----CTWPLVRLLRSQPIRLSARLSLVRFAGKEFKLQALLACALCVAAVAIYQAP 425

Query: 407 AGLLSAFAMLAGLLLAAALLLPALLDQVLAWLARRCHRPLAQWFVADSRQQLPALSLALV 466
               S FA++  +LL+ AL  P ++  +    +        +WF AD+   +    +A +
Sbjct: 426 KSQQSGFAIIGLMLLSVALFTPYIIWTLFTSFSYTLRWVKVRWFFADAAASMSYRGVATM 485

Query: 467 ALLLALAASVGVGSMTEGFRKTFVGWLDLRLSADLYVTPRDTAQGLQIVEWLKQQPGASV 526
           A ++ALAA++GV +M   FR T   WL  RL+AD+Y+ P ++    ++ +WL QQP    
Sbjct: 486 AFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVAS-RMSQWLGQQPEVDA 544

Query: 527 VMPGWRADMQLQGWPVQV------QGIVDHPAYRTRWPLLEQHSRAWQQLASGQAVMLSE 580
           V   W  D   Q  PVQ+       G +D    +   P        W  L   + VM+SE
Sbjct: 545 VWWRWEKDFASQQGPVQIVSTGASDGELDSLTVKLGVP------NYWYHLHHARGVMISE 598

Query: 581 QLARRLNLQLGDSLKLPAGTPA-MPVVGIYADYGNPKGHVLVN-AGWLRAHWPQATLAGL 638
            +A +L ++ GD + LP    +   V G+Y DYGNP   V+++   W++A      +A L
Sbjct: 599 SMALKLGIRPGDLIDLPEPMGSGWAVFGVYYDYGNPYHQVMMSHQNWMKAFAGTGNVA-L 657

Query: 639 SVDLNAEGVA--SLKAALQQHFALDDSRVVEQARLKRWSTDVFNRTFAATAALNSLTLGV 696
           +V L  EG+   S+K  L   F LD  R+ +   +   +  VF+RTF+    L ++TL +
Sbjct: 658 AVVLK-EGLTGESVKKRLDTIFRLDADRIFDNTNIHSHAMRVFDRTFSIAGTLGNITLFI 716

Query: 697 AGVALFINLLTLGQARLGQLAPLWALGVRRMQLVWLSLGQTLMLSGFTVLLAIPLGLLLA 756
           A   +F + L    +RL  ++ L  LGV   +LV +   Q  +    ++L+A+PLGL LA
Sbjct: 717 AVCGIFFSTLAGETSRLRHISLLRCLGVSGKELVLIGGMQLFVFGAISLLIALPLGLTLA 776

Query: 757 WCLVAVVNVQAFGWRLPLYVFPVQLLQLTVLGMLTSLLACAWPLWQLARRPPRELLR 813
             ++ VV   +FGW + L + P + +   V  M+  +LA A P+ +LAR+ P + LR
Sbjct: 777 KLVIDVVIKHSFGWTMQLQMVPGEYVYTVVWSMMALILAGALPIIRLARKSPMKSLR 833