Pairwise Alignments

Query, 819 a.a., putative ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 897 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  285 bits (729), Expect = 8e-81
 Identities = 260/880 (29%), Positives = 399/880 (45%), Gaps = 94/880 (10%)

Query: 4   LSLALLALLSHWRRHRVQCFSIFTGLWLATALWTGVQALNSQARSDYARASAVLTGPLQA 63
           ++  L    +H+R   +Q  +I  G+ LA  L  GV+A N  A   Y+ A+ +L+     
Sbjct: 26  ITWVLKVFFAHYRHAPLQAGAILLGIALAVTLLIGVKATNDNAIRSYSEATELLSQRADV 85

Query: 64  QLIARNGE-RFDQALYVQLRRLGWAVS-PVLEGRL--------RLPGEPARSVRLIGIEP 113
            L +  G+   D+++Y  LR+ G + S  V+ GR+        ++ G    +     +  
Sbjct: 86  LLTSPVGQDNLDESVYFSLRQAGISQSLAVVSGRVAGQNGQYWQIEGSDIVAALTATLTS 145

Query: 114 LSLPPASS---IAGVQVQAFDLQAFVGSPGQAWVGPDTLRQLNTSPGSPTRDSEGQLLPP 170
            +  P+S+    A   V   DL       G+  V          +P      S  Q + P
Sbjct: 146 KNTSPSSNSKATANSAVSMGDLPLAALMSGEPVVVMSDSLASKIAPNGQL--SLAQSIAP 203

Query: 171 MVLQPALAP------GVIVVDIGHAQTLLNAPGQLSRLLL-------------ADTPGPL 211
             L+             I+ DI  AQ LL   G+LS + L              DT G  
Sbjct: 204 STLKVIRVDDSWGLGSAILTDISLAQNLLGMQGKLSYIALFSDRDKLAALKQRLDTLGIT 263

Query: 212 PADIARYLELQPRQDDG-GLQRLTDSFHLDLTALGLLAFVVGLFIAHAAIGLALEQRRGL 270
           P D+A Y +    QD G  L  LT SFHL+L A+ +LAFVVGLFIA+  +  +L +R+ L
Sbjct: 264 P-DLANYSQ----QDQGQALMALTRSFHLNLNAMSMLAFVVGLFIAYNGVRYSLMKRQRL 318

Query: 271 IRNLRACGVSLKTLLCALVLELGLFAALGGLAGVASGYALAAWLLPDVAASLRGLYGAQV 330
           +  L   G+    ++ AL+ EL     LG + G   G  L+ WL P VA +L  LYGA +
Sbjct: 319 LIQLLQQGLKRLDVMLALLAELLFLVILGSVIGFILGLQLSHWLQPMVAMTLEQLYGAHL 378

Query: 331 AGTLSLPAGW---WLL-GVLVSVLGALLAGLESVMRAARLPLLALAQPQAWRLAQGPWLQ 386
                LP  W   WL   + ++++ AL A L       R  L   A       A     Q
Sbjct: 379 -----LPGIWQWHWLAQAIALTLVAALAACLPLYFDLTRQSLAQGANRYQQTKAHNQTHQ 433

Query: 387 RQALLAGLLLLLALGCGVFGAGLLSAFAMLAGLLLAAALLLPALLDQVLAWLARRCHRPL 446
           RQ +LA  LL+LA     F     ++  +L  + +A  LLLP +L   ++ L       L
Sbjct: 434 RQFILACGLLVLAAILFPFSQSYNTSLILLGIVTVAIPLLLPQVLHWGVSLLLPFTRPGL 493

Query: 447 AQWFVADSRQQLPALSLALVALLLALAASVGVGSMTEGFRKTFVGWLDLRLSADLYVTPR 506
             + +A++R+ +  LSLA++A+LLAL+A+V + ++   F +T   WL+ RL ADLY+ P 
Sbjct: 494 KHYLLAETRELIAPLSLAMMAILLALSANVAMNTLVGSFEQTLRSWLETRLHADLYLRPS 553

Query: 507 DTAQGLQIVEWLKQQPGASVVMPGWRADMQL-------QGWPVQVQGIVDHPAYRTRWPL 559
                  + + L Q P  S +   W+ D ++       Q  PV +    D     T   L
Sbjct: 554 ANRMA-DVRDKLSQDPRVSGLYQQWQVDAEISIQGPTPQTIPVNLISRDDESIKYTS-TL 611

Query: 560 LEQHSRAWQQLASGQAVMLSEQLARRLNLQLGDSLKL----PAGTPAMPVVGIYADYGNP 615
            +     WQ+   GQ V++SE +A +  L LGD + L          + + GIY D+GN 
Sbjct: 612 KDSLPDLWQRYFGGQFVLVSEPMAIKYQLMLGDKVTLNVLDKTTNNQVVIAGIYYDHGNT 671

Query: 616 KGHVLVNAGWLRAHWPQATLAGLSVDLNAE----GVAS---------------------- 649
           +  ++++       W QA L  L + L A     G A+                      
Sbjct: 672 RNELIIS----HQLWQQAQLPLLPISLAASFYPLGQANKSSSSVLTQPIPTNGKRSEAEL 727

Query: 650 --LKAALQQHFALDDSRVVEQARLKRWSTDVFNRTFAATAALNSLTLGVAGVALFINLLT 707
             L+  L     L  +++  QA +K  +  +F RTF+ T  LNSLTL VA + LF   L 
Sbjct: 728 DELQMQLATELELAQAQIYSQANIKAQAIAMFKRTFSITLVLNSLTLLVAAIGLFSACLM 787

Query: 708 LGQARLGQLAPLWALGVRRMQLVWLSLGQTLMLSGFTVLLAIPLGLLLAWCLVAVVNVQA 767
           L QAR   LA L++LGV R +L  +   Q L++   T L+A+P G LL + L+  + +QA
Sbjct: 788 LTQARQAPLARLYSLGVSRSKLRTMVFSQMLLVVVITCLIAMPTGALLGYLLIDKITLQA 847

Query: 768 FGWRLPLYVFPVQLLQLTVLGMLTSLLACAWPLWQLARRP 807
           FGW +P+        +  ++ ++T  LA   PL+   RRP
Sbjct: 848 FGWTIPMIWDWFAYTKAILIALVTCTLAVLLPLYWQTRRP 887