Pairwise Alignments

Query, 260 a.a., Periplasmic amino acid-binding protein-related protein from Pseudomonas putida KT2440

Subject, 270 a.a., bacterial extracellular solute-binding proteins, family 3 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 53.5 bits (127), Expect = 4e-12
 Identities = 61/231 (26%), Positives = 92/231 (39%), Gaps = 14/231 (6%)

Query: 20  SASEPVRYCDYPVYPPISWSDGHQVRGLAPTVVRELFARMGYEVQTVVLGNWKRCLMDAA 79
           S S PV     P +PP +    H   GL   ++     R GY V  V L  W R      
Sbjct: 38  STSRPVIATADP-WPPYA-DPAHPAHGLTLEILSLALGRSGYTVTMVYLP-WVRAEQRLE 94

Query: 80  AGRVDVVL-AYNSDQRDQRMRFSTEPVMREEVAVFYNRKRPVQFQQLEDLAGYRGGLLYG 138
            G VD+++  + ++ R +R  FS  P  R  +           F   E L G   G + G
Sbjct: 95  RGGVDLLINCWRTEARAKRYLFS-RPFARNRLLFMQRAGESFVFAGQESLKGKTVGTIRG 153

Query: 139 ESYGAEF--DRFVARHQNIERVSSSQQNFGKLIRGRIDYVIQERRTGLLFIEHLPG--AQ 194
             Y   F  D  + R    E V++ + N  KL+ GR+D +I++       +E LP   A 
Sbjct: 154 YGYTDAFMADTSIRR----EEVTNFKDNVRKLVSGRVDLIIEDELVARTQLEQLPADLAG 209

Query: 195 DIRALPTALSVDYLRVAVSRQSPLSQHMAE-IDAQLQRMNQAGEIARWLEQ 244
            +  +   L  + L V     +P +Q +    DA L  M   G     +E+
Sbjct: 210 QVAFIEPPLVTNDLYVVAYPDNPGAQDIIRAFDAGLAAMIADGSYKALMER 260