Pairwise Alignments

Query, 750 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  227 bits (579), Expect = 4e-63
 Identities = 144/425 (33%), Positives = 228/425 (53%), Gaps = 28/425 (6%)

Query: 208  IDTVANALDDMRRAILSDIERRERDRLELQDKRDELQAMVERRTASLARAKDEAEAANLA 267
            + T+ ++ +    A++S +     D  EL+   DEL             AKDEA+AA+ A
Sbjct: 996  VSTLLDSQNQFESAVVSMV-----DMTELKLLSDELLV-----------AKDEADAASKA 1039

Query: 268  KSRFLATMSHELRTPLNGILGMAELLRGGRLEVADRQRVEALYKAGEGLLAILNEVLYFA 327
            K  FLA MSHE+RTP+N I+GM++L    +L+   +  +E + +A + LL+I+N++L F+
Sbjct: 1040 KGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQKNYLEKIERASQSLLSIINDILDFS 1099

Query: 328  RLEEGESRAERVVFSLRQLCQEVLALLEPMAMENADTLQLQVDEQLAAYQYGAEQYLRQV 387
            ++E G+   E V F L  + +++  +    A +    L   V   +  +  G    L QV
Sbjct: 1100 KIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPNVPRHLLGDPLRLGQV 1159

Query: 388  LSNLLANAIKFTEHGQVQLTVQVLANNECSQRLRLSVRDNGIGIEPAVQAKIFDRFVQAS 447
            L NL+ NAIKFTE G+V L++ ++        LR SVRD+GIG+    Q+K+F  F QA 
Sbjct: 1160 LINLMNNAIKFTERGEVLLSLSLVEQQNDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQAD 1219

Query: 448  EAVTQRYGGTGLGLAICKHLVEKLGGSIGLESVQGQGSCFWF--ELDMARGQPVSAGSPA 505
             + T++YGGTGLGLAI K LVE +GGSIG+ES  G GS F+F  +L ++ GQ +  G   
Sbjct: 1220 TSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFFFTVKLCISSGQKLFVG--- 1276

Query: 506  PSPLPSLDILVVEDVALNREVAGGLLMRDGHRVSFAEDASQALQACAQRRFDLVLLDVHL 565
               L  + ILV +D A  R++    L   G  V       +A+  C+Q+ + + L+D  +
Sbjct: 1277 -QELDGMSILVADDNATARDIMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKM 1335

Query: 566  PGMSGVALCRQLRSSPGPNRHSRILALTAGVQPGQVAGYLDAGMQGVLAKPLR----LDS 621
            P + G+   +Q++         RIL ++A      +      G+ G ++KP+     LD 
Sbjct: 1336 PNLDGIETAKQIKQQ--TKNAPRILMVSAHANQDFLTQIEQLGLAGYISKPISASRLLDG 1393

Query: 622  LRKAL 626
            +  AL
Sbjct: 1394 IMNAL 1398



 Score = 69.3 bits (168), Expect = 2e-15
 Identities = 74/272 (27%), Positives = 117/272 (43%), Gaps = 37/272 (13%)

Query: 508  PLPSLDILVVEDVALNREVAGGLLMRDGHRVSFAEDASQALQACAQRRFDLVLLDVHLPG 567
            PL    IL+VED  +N EVA   L + G  +S A +   AL   AQ+ FDLVL+D  +P 
Sbjct: 1420 PLKGKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPV 1479

Query: 568  MSGVALCRQLRSSPGPNRHSRILALTAGVQPGQVAGYLDAGMQGVLAKPLRLDSLRKALA 627
            M G    + +R  P       ++A+TA    G     L AGM   +AKP+ ++ L + L 
Sbjct: 1480 MDGYQATKAIRQRP-ELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLL 1538

Query: 628  DVAPGEVAS---AGADMDWSL------------------LDTHRSLLGEQKLQGLLKVLR 666
                  V S   A   ++ SL                  LD  R L   Q +Q   ++ +
Sbjct: 1539 KYLGAPVPSLENAEFVVNESLNPLNLDVESVVKWPEHPELDIDRGL---QLVQNSKRLYQ 1595

Query: 667  QSLQQHATA-------LAEALPAQDFTEVLHLAHRLAGSCDSLGFTGLATVLRGL----- 714
            +   + AT+       + +AL +    + + +AH L G   +L  + LA + R L     
Sbjct: 1596 RIFDRFATSQRNVVDQINKALASNKREDAVRMAHTLKGLAGNLSSSKLAELARQLELHLS 1655

Query: 715  EEAARQHDVQAMQALGEPLATQLGQASATLEQ 746
            E A  Q ++  +Q L   +   + +A    E+
Sbjct: 1656 ENADYQVELDQIQILVASICEAIEKAKPQFEE 1687