Pairwise Alignments

Query, 367 a.a., Putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  146 bits (369), Expect = 7e-40
 Identities = 94/358 (26%), Positives = 178/358 (49%), Gaps = 22/358 (6%)

Query: 8   IGGLLLASGASLAQAAEVGSGNTLRLYNWTDYIGETTLADFEKATGIKVIYDTFDGYETV 67
           I GL+L++   +  +++V +  TL +Y W  Y+ E +L  FE+  G+ + Y TF+  E++
Sbjct: 5   IKGLVLSA---VVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESM 61

Query: 68  QTKL-LTGRSGYDLVMLNASLVPPLISAGVFQALDKQQLPSWHNLDQQVVNDLQGYDPGL 126
            TKL L   +GYD+V  +A  +  +   G+   +D  Q+P+  +    V+     +DP  
Sbjct: 62  YTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLG--LAHDPQN 119

Query: 127 KYSAPYTWGSSGVTYNVDKITARMPDAPIGSLAMLFDPKIVSRFADCGVTLMDAPTEVIP 186
           K+S PY WG +G+ YN    ++ +P+  I   A L+D +   +     V L+D   +V  
Sbjct: 120 KFSLPYIWGITGLYYN----SSTLPNG-ITKWADLWDKQYEQQ-----VMLIDDIRDVFG 169

Query: 187 LALQYLGKDPRSASPADLKAAEQLLLGIRPYIRKFDSVNYLTSLPNGDVCLALTWSGDYA 246
           +AL+  G    + +  ++K A + L+ ++  +  ++S        +G+  L + W+G+  
Sbjct: 170 MALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAY 229

Query: 247 TAQARAVEAKKDIKLSFFIPREGSLIWFDNLYIPKDAPHAANAHRFIEFLLQPQTMAKVT 306
             Q    E K      F +P EG+++W DN  IP  + +   AH+FI F+ QP+  A++ 
Sbjct: 230 QGQVEMPELK------FVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIV 283

Query: 307 DYIHYANSNAAATALVRDDIRQDPAIYPDAPTRERLFAQKTQSPRDMRAITRVWSTVK 364
             + YA++     AL+  ++R +P I+P     ++        P  +    + W  ++
Sbjct: 284 QSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLR 341