Pairwise Alignments

Query, 236 a.a., L-lysine and D-lysine ABC transporter, permease component 2 (from data) from Pseudomonas putida KT2440

Subject, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  149 bits (376), Expect = 4e-41
 Identities = 85/218 (38%), Positives = 127/218 (58%), Gaps = 10/218 (4%)

Query: 21  PRFIDGLLVTAKLVAISFSLGAVLGLLLALARLSRSLVLQRMAAGYVYFFRGSPLLAQLF 80
           P ++ GL  T  LV++S  +G +  + LA+AR S+       A GY+YF RG+PLL QL+
Sbjct: 11  PIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFLRGTPLLVQLY 70

Query: 81  LLYYGLGSLKGFWQDVG--LWWFFRDAWFCTLLAFTLNTAAYQAEIFRGSLMAVAPGQHE 138
           L+YYG+      W  V   LW     AWFC L+AF LNT+AY AEI RG++  +  G+ E
Sbjct: 71  LIYYGMDQ----WFPVKDTLW---EHAWFCALVAFILNTSAYTAEIIRGAINGLPKGEVE 123

Query: 139 AARALNLKRSTTFFKVILPQSLLVAIGPLGNELILMIKASAIASLVTIYDLMGVTKLAFS 198
           AA+A  + R  T+ ++ILP +L  ++    NE+I M+  SA+A +VTI DL G  +L  S
Sbjct: 124 AAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLTGAARLVNS 183

Query: 199 RSF-DFQIYLWAAVLYLVIVELVRRLLKHLEARLGRHL 235
           R +  F+ +L A + Y+ +  ++    K  E R   +L
Sbjct: 184 RYYAPFEAFLSAGLFYMALTFIILWCFKQAEQRFLAYL 221