Pairwise Alignments

Query, 236 a.a., L-lysine and D-lysine ABC transporter, permease component 2 (from data) from Pseudomonas putida KT2440

Subject, 219 a.a., amino acid ABC transporter permease from Methanococcus maripaludis S2

 Score =  115 bits (288), Expect = 7e-31
 Identities = 67/202 (33%), Positives = 113/202 (55%), Gaps = 12/202 (5%)

Query: 21  PRFIDGLLVTAKLVAISFSLGAVLGLLLALAR-LSRSLVLQRMAAGYVYFFRGSPLLAQL 79
           P  ID + VT K+  +SF L  ++ +L+   R ++ S  L  +   YV  FRG+PLL QL
Sbjct: 11  PFIIDAVFVTLKITIMSFLLAVIIAVLVGSTRAMNFSKTLDLVLMAYVEVFRGTPLLIQL 70

Query: 80  FLLYYGLGSLKGFWQDVGLWWFFRDAWFCTLLAFTLNTAAYQAEIFRGSLMAVAPGQHEA 139
           F +YYGL S+               + F  +L  +LN  AY +EI R ++ +V  GQ EA
Sbjct: 71  FFIYYGLPSIG----------ITMSSTFAAVLGLSLNGGAYISEIIRAAIQSVPVGQFEA 120

Query: 140 ARALNLKRSTTFFKVILPQSLLVAIGPLGNELILMIKASAIASLVTIYDLMGVTKLAFSR 199
           A +L + +  +   ++LPQ+  + I PL N    ++K S++ S++ I +L  + +L ++R
Sbjct: 121 AESLGMGKIESMVYIVLPQAFRITIPPLVNSFSSILKESSLISVLAITELTRIGQLIYTR 180

Query: 200 -SFDFQIYLWAAVLYLVIVELV 220
            S  F+IYL   ++YL++V ++
Sbjct: 181 TSRPFEIYLTIGLIYLILVSII 202