Pairwise Alignments

Query, 239 a.a., L-lysine and D-lysine ABC transporter, permease component 1 (from data) from Pseudomonas putida KT2440

Subject, 229 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  150 bits (379), Expect = 2e-41
 Identities = 91/231 (39%), Positives = 138/231 (59%), Gaps = 11/231 (4%)

Query: 14  GWGQALLAGALVTVSLALACLPIGLPLGLVVALAARSRKRLPRAWATTFSTVFRGLPELL 73
           G+  +L+  + +T+ +ALA L +GL L LV A    ++ +L +   T   TV RGLPELL
Sbjct: 5   GYSLSLVQASWMTLQIALASLLVGLLLALVFAGGEMAKLKLIKWPTTLLVTVIRGLPELL 64

Query: 74  TLLIIYYGCQIAAQKILAAMGYQGEFL-INTFLAAMIAFSLVFAAFSSEIWLAAFKTLPK 132
            +L IY+G    + ++L  +   GEF+ I+ F++ +IA SL+FA+++S+    A K + +
Sbjct: 65  VVLFIYFG----STQVLFFI--TGEFIEISPFISGVIALSLIFASYASQTLRGALKAVGR 118

Query: 133 GQLEACSALGLSKRTGFFKVLLPQLTRIALPGLSNNWLSLLKDTSLVSTISLVDLMRQTN 192
           GQ EA SALG+     F +++LPQ  R ALPGL N WL LLKDT+LVS I + DL++Q  
Sbjct: 119 GQREAASALGIPPSHAFIRIVLPQAVRHALPGLMNQWLVLLKDTALVSLIGVTDLLKQAQ 178

Query: 193 LAVSVTKEPMFFYGVACLGYLLFAALSGRVFAYIERRSN----RHLQGARA 239
           L  + T E   +Y  A + YL+   ++ RV   I+ + +     H QGA A
Sbjct: 179 LTSAATHEAFTWYATAAVVYLVITLITQRVVKVIDNKFSIQGMSHSQGASA 229