Pairwise Alignments

Query, 239 a.a., L-lysine and D-lysine ABC transporter, permease component 1 (from data) from Pseudomonas putida KT2440

Subject, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  144 bits (363), Expect = 2e-39
 Identities = 81/239 (33%), Positives = 137/239 (57%), Gaps = 19/239 (7%)

Query: 14  GWGQALLAGALVTVSLALACLPIGLPLGLVVALAARSRKRLPRAWATTFSTVFRGLPELL 73
           G+  ++L GAL+T+ +A+  L + + LG++ ALA  +  R  RA AT ++T+ RG+P+L+
Sbjct: 6   GYEASILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIPDLV 65

Query: 74  TLLIIYYGCQIAAQKILAA------------------MGYQGEFL-INTFLAAMIAFSLV 114
            +++I++G QI     L+                   + Y  +++ I+ F+A ++    +
Sbjct: 66  LMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTIGFI 125

Query: 115 FAAFSSEIWLAAFKTLPKGQLEACSALGLSKRTGFFKVLLPQLTRIALPGLSNNWLSLLK 174
           F A+ +E +  A   + KG+LEA  A G+S    F ++LLPQ+ R A+PG  NNWL LLK
Sbjct: 126 FGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVLLK 185

Query: 175 DTSLVSTISLVDLMRQTNLAVSVTKEPMFFYGVACLGYLLFAALSGRVFAYIERRSNRH 233
            T+LVS I L D++R ++LA   TK P  FY    + +L F ++S  +   +ER+ + H
Sbjct: 186 TTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERKFSIH 244