Pairwise Alignments

Query, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

Subject, 260 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  195 bits (496), Expect = 7e-55
 Identities = 108/257 (42%), Positives = 152/257 (59%), Gaps = 9/257 (3%)

Query: 1   MNKSMALLGACALLLAGAASAE---TLRFATEGAYPPFNYVDADNKLHGFDVDITHALCE 57
           M K +      A  ++G   A+   T+RF  EGAYPPF++ +AD  L GFDVD+ +ALC 
Sbjct: 3   MKKWLVATALIATTISGVTQAKEWKTVRFGIEGAYPPFSWTEADGSLKGFDVDMANALCA 62

Query: 58  QMKVECTLVAQDWEGIIPALMARKYDAIVASMIDTEERRKKIAFTDHYYRTPLTVAVAKD 117
           +M+VEC +V QDW+GIIP+L+ARKYDAI+A+M  TEER+KK+ FT  Y + P      K 
Sbjct: 63  EMQVECKIVPQDWDGIIPSLLARKYDAIIAAMSITEERKKKVDFTGKYAQIPNKFIAKKG 122

Query: 118 SKIDSAQTDFVGYTVGAQSSSTQAIYAEDVYGKAGADVKLYPTMDEANADLAAGRLDGVI 177
           + +   +    G  +G Q ++T   Y  D YG    D+  Y + DEA  DLA GR+  V+
Sbjct: 123 ADLAFTKEGLKGVKIGVQRATTHDKYITDNYGDT-VDIVRYGSFDEAYLDLANGRIAAVL 181

Query: 178 ADKFPLHEWM-NKNGGDCCKILG-DVADTK---ADAAIAVRKDDEALRQRLNTALQQIVA 232
            D   L E M NK GGD  + +G  + D K       IAVRK D+ L ++L+ A+  +  
Sbjct: 182 GDASALEEGMLNKPGGDAYEFVGPSLTDPKWFGEGMGIAVRKQDKELTEKLDAAITALRE 241

Query: 233 NGTYQKIASKYFAFDIY 249
            G YQ+I +KYF +D+Y
Sbjct: 242 KGIYQQIQAKYFKYDVY 258