Pairwise Alignments

Query, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

Subject, 260 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  176 bits (446), Expect = 4e-49
 Identities = 97/253 (38%), Positives = 137/253 (54%), Gaps = 6/253 (2%)

Query: 3   KSMALLGACALLLAGAASAETLRFATEGA-YPPFNYVDADNKLHGFDVDITHALCEQMKV 61
           K +AL  A A+  A  ASA+ ++       YPPF   DA     G++++   A+C + K+
Sbjct: 6   KLVALAAALAITGAATASAQQVKVGIAAEPYPPFTSPDASGNWEGWEIEFMKAMCAEAKL 65

Query: 62  ECTLVAQDWEGIIPALMARKYDAIVASMIDTEERRKKIAFTDHYYRTPLTVAVAKDSKID 121
           +C +    W+GIIPAL ++K D I+ SM  T ER K I F+D YY TP  +  AK   I 
Sbjct: 66  DCVVTPVAWDGIIPALTSKKIDMIIGSMSITAERLKTIDFSDKYYNTPTGIIGAKGDDIK 125

Query: 122 SAQTDFVGYTVGAQSSSTQAIYAEDVYGKAGADVKLYPTMDEANADLAAGRLDGVIADKF 181
                  G T+G Q S+    YA   +  AG +VK Y T DEAN DLAAGR+D V AD  
Sbjct: 126 PTPEGLAGKTIGVQVSTVHQAYAMKHFAPAGVEVKEYQTQDEANQDLAAGRVDAVQADAI 185

Query: 182 PLHEWMNKN-GGDCCKILGDVAD----TKADAAIAVRKDDEALRQRLNTALQQIVANGTY 236
            L  ++  + G  CC   G+VA+          + +RK +  L++++N A++ I  NGTY
Sbjct: 186 ALDAFLKSDQGKQCCDYKGEVAEDVDVIGPGVGVGLRKGETELKEKVNAAIKAIRENGTY 245

Query: 237 QKIASKYFAFDIY 249
              + KYF FDIY
Sbjct: 246 DAFSKKYFDFDIY 258