Pairwise Alignments

Query, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

Subject, 263 a.a., extracellular solute-binding protein, family 3 (NCBI) from Rhodospirillum rubrum S1H

 Score =  221 bits (562), Expect = 2e-62
 Identities = 113/255 (44%), Positives = 154/255 (60%), Gaps = 11/255 (4%)

Query: 6   ALLGACALLLAGAA----------SAETLRFATEGAYPPFNYVDADNKLHGFDVDITHAL 55
           AL  A  +LL G A           AET+RFATEGA+PPFN+ DA  K  GFD+DI +AL
Sbjct: 10  ALFAAAGILLGGQAVTMALGVADARAETIRFATEGAFPPFNFTDAAGKPQGFDIDIANAL 69

Query: 56  CEQMKVECTLVAQDWEGIIPALMARKYDAIVASMIDTEERRKKIAFTDHYYRTPLTVAVA 115
           C Q+K EC++V QDW+GIIP L+A+KYDAI+ASM  T ER++ + FTD YY         
Sbjct: 70  CAQLKAECSMVTQDWDGIIPGLLAKKYDAIIASMSITPERQQSVLFTDAYYNNQFHFVGP 129

Query: 116 KDSKIDSAQTDFVGYTVGAQSSSTQAIYAEDVYGKAGADVKLYPTMDEANADLAAGRLDG 175
           K    D ++    G  +GAQ ++  + + ED  G     + LY T +EA  DL AGR+D 
Sbjct: 130 KGKDFDLSKAGLKGKAIGAQRATVSSQWIEDTLGDT-VSLNLYDTAEEAYLDLEAGRVDL 188

Query: 176 VIADKFPLHEWMNKNGGDCCKILGDVADTKADAAIAVRKDDEALRQRLNTALQQIVANGT 235
           ++ D +P ++W+N   G   ++ G+         IA+RKDD AL  +LN AL++I+ANGT
Sbjct: 189 LLNDTYPTYDWLNSPAGQAYELKGESVIKDDVVGIALRKDDTALAAKLNGALKEIIANGT 248

Query: 236 YQKIASKYFAFDIYN 250
           Y KI  KYF F + N
Sbjct: 249 YAKINEKYFPFSLLN 263