Pairwise Alignments

Query, 442 a.a., transposase from Pseudomonas putida KT2440

Subject, 333 a.a., Probable transposase from Mycobacterium tuberculosis H37Rv

 Score =  104 bits (259), Expect = 5e-27
 Identities = 91/364 (25%), Positives = 154/364 (42%), Gaps = 43/364 (11%)

Query: 90  VNARATRQITGRKSDVLDCQWIWQLMTHGLLRGAFRPDDLTCCVRSLVRQRASKVKDQAQ 149
           V  RA  +  GRK+D+LD +W+  L+  GLLRG   P       R ++R R   V+ +  
Sbjct: 1   VQCRAREERPGRKTDLLDAEWLVHLLECGLLRGWLIPPADIKAARDVIRYRRKLVEHRTS 60

Query: 150 TLNRMQKAMSQMNIQLANVISDISGVTGMKILRAICAGERDPVQLAELTDRRIKAGKEAV 209
            L R+   +    I+  +V S ++  +   ++ A+  GER P  LA+L    +++    +
Sbjct: 61  KLQRLGNVLQDAGIKADSVASSVTPKSVRAMVEALIDGERRPAVLADLARGSMRSKIPDL 120

Query: 210 ARSLHGNWRREHLHALTQELAAYDFLEQQIADCDDAIKAALEQLPVLQNKPEPSKKPLRS 269
            R+L G +   H       LA  D L+  I   D+ I+  +         P  +++ L  
Sbjct: 121 QRALEGRFDDHHALMCRLHLAHLDQLDAMIGALDEQIEQLMH--------PFCARREL-- 170

Query: 270 PHRNGAQQTVLHQTLWKVLGVDLTAIPTIGVDTALVLAGEIGTD-LSRFPSSQHFCSWLG 328
                                 + +IP IGV  +  +  EIG D  + FPS++H  SW+ 
Sbjct: 171 ----------------------IASIPGIGVGASATVISEIGADPAAWFPSAEHLASWVR 208

Query: 329 LAPPTRISGGHRLAGGGPKIVNRAAQALKQAASNARNDKGFIGASHRARLTRMD------ 382
           L P    S G R  G            L + A  A    G++   +R ++ +        
Sbjct: 209 LCPGNHESAGKRHHGARRTGNQHLQPVLVECAWAAVRTDGYLREYYRRQVRKFGGFRSPA 268

Query: 383 -TSCAIKATAHQLARLVYNLLTKKQAYVEQGLEEFEAR-SQDRQVRALLRK--ARKLGYQ 438
               AI   AH+L  +++++L   + + + G + F  R   D++ R L+ K  A+ LG  
Sbjct: 269 ANKKAITTVAHKLIVIIWHVLATGRPHQDLGADYFTTRMDPDKERRRLVAKLEAQGLGVT 328

Query: 439 LVAA 442
           L  A
Sbjct: 329 LEPA 332