Pairwise Alignments

Query, 1032 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

Subject, 1034 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

 Score =  918 bits (2373), Expect = 0.0
 Identities = 482/1022 (47%), Positives = 687/1022 (67%), Gaps = 7/1022 (0%)

Query: 1    MNLSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMT 60
            MNLS  FI RPVAT L  LAI+L G +++ LLPVS LP +D+P I V    PGASP++M 
Sbjct: 1    MNLSAPFIARPVATMLLSLAILLLGGVSFGLLPVSPLPNMDFPVITVQASLPGASPEIMA 60

Query: 61   SAVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAASNLLP 120
            S+V  PLER  G + G+ QM S SS G++ + ++F+LD +++ A + VQAAINA+ NLLP
Sbjct: 61   SSVATPLERSLGSIAGVSQMTSRSSQGSTRIIIQFDLDRDINGAARDVQAAINASRNLLP 120

Query: 121  SDLPAPPVYNKVNPADTPVLTLAISSKTMPLPKLNDLVDTRVAQKLAQISGVGMVSIAGG 180
            S + + P Y K+NP+  P++ L+++S+ +   +L D+  T +AQKL+Q+SGVG + + G 
Sbjct: 121  SGMRSMPTYRKINPSQAPIMVLSLTSEVLDKAELYDIGSTILAQKLSQVSGVGEIQVGGS 180

Query: 181  QRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVSMLDANDQLRSPEE 240
               AVR+++    L   G++LD+VR  I   NV +PKG  +   +   + ANDQL    +
Sbjct: 181  SLPAVRVELQPQQLEQYGVSLDEVRQTIANGNVRRPKGMVEDADQHWQVRANDQLHQAAD 240

Query: 241  YANLILAYNNGAPLRLKDVAEIVDGAENERLAAWANENHAVLLNIQRQPGANVIEVVDRI 300
            Y  LI+ Y +GA LRL DVA + D  E+   + + N   AVLL + RQ GAN+IE ++ I
Sbjct: 241  YTPLIIRYQDGAALRLGDVARVRDSVEDRYNSGFFNNEQAVLLIVNRQAGANIIETIEGI 300

Query: 301  KGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMVTFVFLRRFSATL 360
            +  LP++   +P  +D+++  DR+  IRA + + +  LLIA+ LV+++ F+FL R    L
Sbjct: 301  RRELPALQAIMPGSVDLNIAMDRSPVIRATLHEAERTLLIAVGLVIVLVFLFLGRLRTAL 360

Query: 361  IPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISRHIEEGETP 420
            IP++AVP+SL+GTF VMY+ GFS+N L+LMAL +A G VVDDAIV+LENI+RHI++G  P
Sbjct: 361  IPALAVPVSLVGTFAVMYMFGFSLNVLSLMALILAAGLVVDDAIVVLENIARHIDDGMPP 420

Query: 421  MQAALKGARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLT 480
            ++AA  G R++GFTL+S+  SL+ V + +L+M  +V RLFREF+ITLA AIL+SL+VSLT
Sbjct: 421  LKAAYVGTREVGFTLLSMNLSLVVVFVSILYMGGIVERLFREFSITLAAAILVSLLVSLT 480

Query: 481  LTPMMCARLLK-REPKEEEQGRFYRASGAWIDWLIQHYGSALQWVLKHQPLTLLVAVASL 539
            LTPM+CAR LK  EP  E++GR  R S     WL+++Y  +L W L+H+ +TLL  +A++
Sbjct: 481  LTPMLCARWLKPHEP--EKEGRLQRWSHDAHQWLLRYYDRSLSWALRHRRITLLSLLATI 538

Query: 540  VLTVFLYMVVPKGFFPVQDTGVIQGISEAPQSTSFAAMSERQQALSKVILQDPAVQSLSS 599
             L V LY+ VPK F P QDTG I G        SF  M  + +   K +L DPAV+S++ 
Sbjct: 539  ALNVVLYVQVPKTFLPQQDTGQITGFIRGDDGMSFQVMQPKMEIFRKAVLADPAVESVAG 598

Query: 600  YIGVDGDNATLNSGRLLINLKPHGERDVSASEVISRLQPQVDRLVGIRLFMQPVQDLSI- 658
            +IG  G    +N+  +++ LKP  ER +SA +VI R++    ++ G R+F+   QDL   
Sbjct: 599  FIGGQGG---INNAFMIVRLKPLNERGISAQKVIERIRKNQPKVPGGRMFLMADQDLQFG 655

Query: 659  EDRVSRTQYQFSLSSPDADLLAQWSGKLVQALQQRPELADVASDLQDKGLQVYLVIDRDM 718
              R S + Y ++L + D + L  W  ++ +AL   PEL  + ++  +   Q+ L IDRD 
Sbjct: 656  GGRQSSSAYAYTLLASDLNDLRTWVPQVTRALSDLPELTSIDANDGEGAQQISLKIDRDA 715

Query: 719  ASRLGISVSQITNALYDAFGQRQISTIYTQASQYRVVLQSSDAATIGPQALESIHVKATD 778
            A RLGI +S +T  L +AF QRQISTIY   +QY+VV++   +    P+ LE IHV  +D
Sbjct: 716  AKRLGIDMSTVTTLLNNAFSQRQISTIYESLNQYQVVMEIDPSYAQYPEVLEQIHVVTSD 775

Query: 779  GGQVRLSALARIEQRQAQLAISHIGQFPAVTLSFNLAHGASLGEAVQVIEQVQKDIGMPL 838
            G +V L+A AR E+   +  +SH GQF A  + F+LA G SL +A   IE+    IGMP 
Sbjct: 776  GRRVPLAAFARYERSLEEDRVSHDGQFAAENIDFDLAPGVSLDQATLAIERAVAAIGMPS 835

Query: 839  GVQTRFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYESYIHPITILSTLPSAAVGAL 898
             VQ R  G   AFQ +     L+IL A++ +YIVLG+LYESYIHP+TILSTLPSA VGAL
Sbjct: 836  EVQGRLGGTGSAFQTTQEGQPLMILGALLLVYIVLGILYESYIHPLTILSTLPSAGVGAL 895

Query: 899  LALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALEAERNQGMSPRDAIYQAALLRFR 958
            LA++++G+   +I+++G+ LLIG+VKKNAI+MID AL+ ER   +SP D+I++A LLRFR
Sbjct: 896  LAIILTGDQFSLISLLGLFLLIGVVKKNAILMIDLALQFERQDKLSPADSIHRACLLRFR 955

Query: 959  PILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLYFDRLA 1018
            PILMTT+AA+ GA+PL+L    GAE+RQPLGL ++GGLL+SQ+LTL+TTPV+YLY DRL 
Sbjct: 956  PILMTTMAAILGALPLLLGGAEGAEMRQPLGLTIIGGLLLSQILTLYTTPVVYLYLDRLR 1015

Query: 1019 RR 1020
             R
Sbjct: 1016 HR 1017