Pairwise Alignments

Query, 496 a.a., RND efflux transporter, outer membrane protein from Pseudomonas putida KT2440

Subject, 465 a.a., outer membrane efflux protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  192 bits (489), Expect = 2e-53
 Identities = 122/416 (29%), Positives = 221/416 (53%), Gaps = 8/416 (1%)

Query: 74  WWEIYGDAGLNALVEELNRSNQTVAQSEAQYRQAQALVRSSRAALFPSLDLSTSKNRSAQ 133
           WW+ + D  L++L+      N +VA +  +   A+A + + R   FPS+ L+    R  Q
Sbjct: 53  WWKSFQDTRLDSLIALAVDRNYSVAMAINRIAAARANLWAERGNFFPSIGLNAGWTR--Q 110

Query: 134 GTGSSSSSLSNNSSGIRNTYNAQLGVSWEIDLWGKLRETLNANEASAEASFADLASIRLS 193
            T  ++S+L  ++    + Y+A L +SWEID++G +R+ + A + +  AS  + A++ +S
Sbjct: 111 ETSGNTSTLPQSTD---HYYDAALSMSWEIDVFGSIRKRVKAQKENFAASKEEYAAVMVS 167

Query: 194 QQSELVQNYLQLRVIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQARTQLKST 253
             SE+   Y+ LR + ++  ++   VA+ E  L++ E +Y  G+     VAQA++ L ST
Sbjct: 168 LASEVASAYINLRELQQELEVVNKNVASQEEVLKITEVRYNTGLVAKLDVAQAKSVLYST 227

Query: 254 QADLIDLIWQRAQFENAIAVLLGKAPADF--ALADSKAIPA-LPQIPVSLPSQLLERRPD 310
           +A +  L     Q+   +AVLLG  P +    L  +  +P  +  I V +P  LL RRPD
Sbjct: 228 KASIPQLEAGINQYITTLAVLLGMYPQEIRPVLETTGTLPDYMEPIGVGMPVDLLLRRPD 287

Query: 311 IAAAERNVMAANANIGVSRAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSVGPQLALTL 370
           + +AER+V A  A +G S++ + P + L  S GY++   ++ ++  +  + + P L+ T+
Sbjct: 288 VRSAERSVNAQAALLGASKSDWLPKIFLKGSFGYAARDLNDLVKSKSMTYEIAPSLSWTI 347

Query: 371 FDAGKRSAEVDRTVAVYDQTVAQYRQTVLDGFREVENLLVQLKVYGDEAVVRQEALDAAR 430
           F  G+         A  D+++ Q+ QTVL   +E +N +   +    + V  +E  +   
Sbjct: 348 FSGGQLVNATRLAKAQLDESINQFNQTVLTAVQETDNAMNSYRNSIKQIVALREVRNQGV 407

Query: 431 ESLRLTENQYRAGLIGYLDVVNVQTTALSNERSVLNLLQGRLVASVQLVAALGGGW 486
           E+L+L+   Y+ GL  + +V++ Q + LS E  ++      L+  + L  ALGGGW
Sbjct: 408 ETLKLSLELYKQGLSPFQNVLDAQRSLLSYENQLVQAQGSSLLQLISLYKALGGGW 463