Pairwise Alignments

Query, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

Subject, 174 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas fluorescens FW300-N1B4

 Score =  130 bits (328), Expect = 9e-36
 Identities = 71/157 (45%), Positives = 96/157 (61%), Gaps = 2/157 (1%)

Query: 15  LYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPL-ADIREPRAYLLTVGKRLL 73
           LY  H  WL   LRRR+ NA DAADL+ DTF+R+L   Q    D+RE R+YL T+ + L 
Sbjct: 12  LYTCHHQWLYELLRRRLSNAMDAADLAHDTFMRVLKRPQAFDCDVRE-RSYLATIARGLC 70

Query: 74  SNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIRKAFLWSQ 133
            +  +RR LE A+L  LA  P    PSPEQR +++ETL  +D LL  L   +  AF+ +Q
Sbjct: 71  IDHWRRRQLEHAWLQTLAARPPALQPSPEQRAIIVETLHEVDALLQRLPKRVSDAFILAQ 130

Query: 134 LEGLGYAEIGQRLGVCQRSVKRYMAQAYEHCLLAELQ 170
           L G+ Y  I   +GV +R VK+Y+AQA  HC + E +
Sbjct: 131 LHGMPYRLIASEIGVSERMVKKYLAQAMMHCAILEAE 167