Pairwise Alignments

Query, 325 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 367 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas fluorescens FW300-N2E2

 Score =  114 bits (286), Expect = 3e-30
 Identities = 91/313 (29%), Positives = 149/313 (47%), Gaps = 14/313 (4%)

Query: 12  LPDFALLPFGAFLDKLRFSADDEDYSQQRYCSWMVAGLSLEPVPSSSGAVLQVEAIADQL 71
           L +F L+   + ++ LR +      S +    W    +    V +S G  LQ+   A   
Sbjct: 23  LDNFTLISLASAVEPLRMA---NQLSGRELYRWTTLTVDGGQVWASDG--LQITPDASMH 77

Query: 72  DLDLFDYLVVFGGRSAMATAALAPRYQALLRQAAKAGVKLVGVDNGAFLLAACGLLQGHK 131
                D ++V GG     T  +   + + L+  A+   +L  V  G++ LA  GLL G  
Sbjct: 78  KAPALDTVIVCGGIGIQRT--VTREHVSWLQSQARQSRRLGAVCTGSWALACAGLLDGFD 135

Query: 132 VVVHWRHEAEFRAAFPQLQLLREQLYCIDGNRITCAGGTAAIDLAVALLSRACGRTRALK 191
             VHW   A  + AFP++ +   +L+ +D NR T +GGTA +D+ + L+SR  GR  +  
Sbjct: 136 CSVHWECLAAMQEAFPRVSM-STRLFTLDRNRFTSSGGTAPLDMMLHLISRDHGRELSA- 193

Query: 192 GLADMLVDET----RDSRHALRSLELGACQGRQVQRAQALMRHHLGTPLAVEQLAAELGI 247
            +++M V E     +D +       LG  Q + +Q   ALM  +L  P+ +++LA  + +
Sbjct: 194 AISEMFVYERIRNEQDHQRVPLKHMLGTNQPK-LQEIVALMEANLEEPIDLDELAVYVAV 252

Query: 248 SRRQLDRQFQASHGMSTKAWWLEMRLQQARWRLLNSSHSLAQIADEVGLGDASYLGKCVR 307
           SRRQL+R FQ     S   ++L++RL +AR  L  +  S+ ++A   G     +  KC R
Sbjct: 253 SRRQLERLFQKYLHCSPSRYYLKLRLIRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYR 312

Query: 308 RRFGCTALQLRAG 320
             FG      R G
Sbjct: 313 EYFGIPPRDERVG 325