Pairwise Alignments

Query, 325 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 329 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas stutzeri RCH2

 Score = 93.6 bits (231), Expect = 6e-24
 Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 16/275 (5%)

Query: 52  EPVPSSSGAVLQVEAIADQLDLDLFDYLVVFGGRSAMATAALAPRYQALLRQAAKAGVKL 111
           +PV + SG  + V+ + D+ D+ +   L  F G    A  A  P     LR+   AG  +
Sbjct: 59  QPVNTFSGTGIAVDGLLDEADMVI---LPAFWG-DFDALCAQYPEVAPWLRERHAAGSVI 114

Query: 112 VGVDNGAFLLAACGLLQGHKVVVHWRHEAEFRAAFPQLQLLREQLYCIDGNRITCAGG-T 170
            G   G F +A  GLL+G +   HWR   +F A FP +    ++ +  D + + CAGG T
Sbjct: 115 CGEATGVFWMAQAGLLEGREATTHWRFANDFAARFPGVAFSADK-HLTDSDNLYCAGGTT 173

Query: 171 AAIDLAVALLSRACGRTRALKGLADMLVDETRDSRHALRSLELGACQ---GRQVQRAQAL 227
           +A DL + L+ R CG   A     D+L +  R   ++   L  G  +     ++ + Q  
Sbjct: 174 SACDLYMYLVERFCGAHVAQGMARDVLFELQRS--YSPGRLGFGGQKLHLDTRILQIQEW 231

Query: 228 MRHHLGTPLAVEQLAAELGISRRQLDRQFQASHGMSTKAWWLEMRLQQARWRLLNSSHSL 287
           +  +       E +A + G+S R   R+F A+ G     +   +R++ A+  L  +  S+
Sbjct: 232 LEANFAEKFRFEDVARQHGMSIRNFMRRFHAATGDKPLHYLQRLRIETAKSLLATTGKSI 291

Query: 288 AQIADEVGLGDASYLGKCVRRRFGCTALQLRAGHY 322
             I+ EVG  DAS+  +  R+       +L   HY
Sbjct: 292 KTISYEVGYDDASFFARLFRQH-----TELSPNHY 321