Pairwise Alignments

Query, 282 a.a., glycine betaine ABC transporter (permease) from Pseudomonas putida KT2440

Subject, 513 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  216 bits (549), Expect = 1e-60
 Identities = 115/260 (44%), Positives = 171/260 (65%), Gaps = 3/260 (1%)

Query: 17  INRLVDWLVLNYGDHLRSLSDQLLQLLVGLENLLRLLPWWLLLLLVGLLAWHASRSLLRS 76
           +   + W V N      +L+  +  LL  LE +L   PW ++  L+ LL W  +   LR+
Sbjct: 252 VEDFIAWTVRNTEAFFDALTFGIRTLLDALEVILVQTPWIVIASLIVLLTWLTAG--LRT 309

Query: 77  AVLV-ALLALIGMLGLWDKLLQTLALVLVSTGLCVLVGVPLGILLAARPLARRLLLPVLD 135
           A+   A LA +G+LG W+  + TLAL+  +  L +++G+PLG+  A RP     + P++D
Sbjct: 310 AIYSSAFLAYMGLLGFWEAAMTTLALLGTAACLSIVIGIPLGMFAARRPRFYAFIQPIMD 369

Query: 136 VMQTLPAFVYLIPVLMLFGLGKVPAVFATLIYALPPLVRLTELGLSQIDPSLLQAAHGLG 195
            MQT+PAFV+++PV+  FG+GK  AV  T+I+   P+VRLT LGL  +  S+ +AA   G
Sbjct: 370 FMQTMPAFVFMVPVIAFFGVGKPAAVIVTMIFGGTPVVRLTVLGLRGVPESVREAAISFG 429

Query: 196 ASRWQRLRRIALPLALPSIMAGLNQSVMMALSMVVVASMIGARGLGEDVLAGIQTLNVGQ 255
           A++W  L ++ LPLA PSI AG+NQ++M++L+MVVVAS+IGA+GLGEDVL  +Q  NVGQ
Sbjct: 430 ANKWYLLTKVDLPLAGPSIRAGINQTIMLSLAMVVVASLIGAKGLGEDVLEALQYANVGQ 489

Query: 256 GMEAGLAIVALAMVIDRISQ 275
           G+ AG +I+  AM++DRI Q
Sbjct: 490 GILAGFSILFCAMILDRIVQ 509