Pairwise Alignments

Query, 338 a.a., putative Amino acid transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 343 a.a., Substrate-binding region of ABC-type glycine betaine transport system (NCBI) from Rhodospirillum rubrum S1H

 Score = 47.4 bits (111), Expect = 5e-10
 Identities = 76/351 (21%), Positives = 130/351 (37%), Gaps = 49/351 (13%)

Query: 1   MKSISTLLAGLLLTVGLASTDSAASAEQPA------PIHFGAIGWESGALTTEILRLIVE 54
           ++ ++ + A +L  V       A +AEQP       PI       E    T  + R + E
Sbjct: 9   LRFLAPVSAPVLAVVCALGVLPANAAEQPGKGVSVLPIKSSIA--EETFQTLLVSRALAE 66

Query: 55  RGYGYRTDTLPGSTVSMEVALARNDLQVIAEEWAG-RSPAWVKAEQAGQVFALGDTVKNA 113
            GY  + D       +  VALA  D   +A  W       + +A    +++  G   + A
Sbjct: 67  LGYDVK-DIGEIDYAAGHVALANGDATFLAAHWNPLHKDFYERAGGDAKLYRDGVYSEGA 125

Query: 114 EEGWWVPAYVIEGDAARNLKPVAPELHSVEDLKRYPQVFS--DPESPGKGRFLNSPSGWT 171
            +G+ +     E  A   +           D  + P++ +  D +  GK        GW 
Sbjct: 126 LQGYLIDKKTAEAHAITRI-----------DQLKDPKIAALFDHDGDGKADLAGCTPGWG 174

Query: 172 SETVNSQKLKAYGLDGLYNNFRSGSGAAMDAEIGSAIRRGKPVLFYYWNPTPLMGRYKLI 231
            E V    L AYGL     + + GS +A+ A+  +  ++G  VL+Y W P      Y + 
Sbjct: 175 CEAVIEHHLDAYGLRKTVTH-QQGSYSALMADTITRFKKGASVLYYTWTP------YWVS 227

Query: 232 RLEEPPFDAQAWATLTDPANPNPKGSRSLPAKLSIG-------------VSKAFRENYPD 278
            +  P  D   W  L  P +  P   + +   L+ G              ++A+ E  P 
Sbjct: 228 GVLVPGRDV-TW--LQVPFSALPGSRKDVDTALATGQNYGFQANTQQIVANRAWAEANPA 284

Query: 279 LVSVFEQVDLPIDRLNKALAVMSEKRTPPREAAL---TFLRDNREVWKAWL 326
             ++F  + LP   +N     M        + A     ++  +R+ W  WL
Sbjct: 285 AATLFSLMRLPNADINAQNLRMRNGENSQADIARHVDGWIAGHRQTWDGWL 335