Pairwise Alignments

Query, 397 a.a., multidrug efflux transport system - membrane fusion protein from Pseudomonas putida KT2440

Subject, 390 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  202 bits (514), Expect = 1e-56
 Identities = 130/369 (35%), Positives = 202/369 (54%), Gaps = 29/369 (7%)

Query: 1   MATPTDTPTPSVAPEPS---RKRKAW----LLGLLLL--LILAGVGTWAWYSIVGRWHES 51
           M+T    P  +V+ EP+      ++W    LLG+L++  +  AGV  W W++  GR+ E+
Sbjct: 1   MSTAPSGPRSTVSAEPTLPPASPRSWGRRLLLGVLVVGAVAAAGVFGWRWWT-EGRFLET 59

Query: 52  TDDAYVNGNVVEITPLVAGTVTSIGADDGDLVHAGQVLLQFDPADSEVALQSAEAKLARS 111
           TD+AY+ G++  I P V+G V  +   D ++V AGQ+L++ D AD  V +  A A     
Sbjct: 60  TDNAYIQGDITAIAPKVSGYVDEVAVGDNEVVSAGQLLVRLDSADYRVQVDQARANAEGK 119

Query: 112 VRQVRGLYSNVD-------SLKAQLETRQAELRKAQQDFNRRKVLADSGAIAAEELSHAR 164
             ++  + +N+D         +  ++  QA   +A +D  R + L   GA + + L  AR
Sbjct: 120 AAELASIIANIDLQQTAIAQARGAMDAAQARFDRAAKDLARYQDLVGRGATSRQSLDSAR 179

Query: 165 D-------DLSVAQAAVNSARQQLSTSSALVDDTVVSSHPDVMAAAADLRQAYLDHARTT 217
           +       +L  A AA++ A+++L+  SA  D    ++  +V +A A    A ++ A T 
Sbjct: 180 EQATSGAAELRSAAAALDGAQKRLAVLSADRD----AAAAEVRSAQAQRALAEINLANTE 235

Query: 218 LVAPVTGYVAKRTVQLGQRLQPGTATMAVIPLDQVWIDANFKETQLREMRIGQPVEITAD 277
           + AP+ G V  R V+ GQ + PG+A MA++PL+ +WI ANFKETQL  M  GQ V++  D
Sbjct: 236 IRAPIAGVVGNRGVRAGQYVAPGSALMAIVPLEGLWIAANFKETQLGAMAPGQTVKVEID 295

Query: 278 VYGSEVKYSGTVDSLGAGTGSAFALLPAQNATGNWIKIVQRVPVRIHLSPDQLKDHPLRI 337
            Y       G V S    +G+ F+LLP +NATGN+ K+VQRVPVRI +  D      +R 
Sbjct: 296 AYSGR-HGQGRVVSFAPASGAQFSLLPPENATGNFTKVVQRVPVRIEMLADDPLSALMRP 354

Query: 338 GLSTVVEVD 346
           GLS  V VD
Sbjct: 355 GLSVEVSVD 363