Pairwise Alignments

Query, 688 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 648 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  288 bits (736), Expect = 7e-82
 Identities = 197/527 (37%), Positives = 280/527 (53%), Gaps = 35/527 (6%)

Query: 179 FAELVDHSVVNVHVVDKDLRWLAVNRQARHDFHLLYGRTPEIGDYLPGLFEDGTAGQTPI 238
           F E+  H    + V+D DL       +  H F LL G        L  +F  G   +  +
Sbjct: 137 FREIFIHVAAPIAVLDADLGL----HECNHAFELLIGAASPAAALLSEVFAPGQ--EALV 190

Query: 239 LPMWQRALAGEQFIEIGTFGKPPAVRHYELRFNALRDPKGEVQGAFLFAYDISE-----R 293
             +     AGE++            R  E + +  R P        +F  D++E     R
Sbjct: 191 AELRAHLQAGERWRTPLQMRVNGETRETEWQISPYRTPGL----GLVFVEDVTEQRHRER 246

Query: 294 VQEQE-------------RLAKAEAALRQAQKMEAVGQLSGGIAHDFNNLLGGILGAQEL 340
            Q QE               A+ E  L QAQKM+A+G+L+GGIAHDFNNLL GI+   EL
Sbjct: 247 AQRQEIANTTSKLAHEVAERARTEEQLLQAQKMDALGKLTGGIAHDFNNLLTGIITGIEL 306

Query: 341 MRQRLDQSRFDALAPLLELSSSAAQRASSLVHRLLAFSRQQTLQPCSTQVATLVAGMEDL 400
           M+QR+ + R D++    + S S+A+ A+SL +RLLAF+R+Q L   +  +   +  +EDL
Sbjct: 307 MKQRIIEGRADSVLRFADASLSSARSAASLTNRLLAFARKQPLDARALNINERIRSLEDL 366

Query: 401 LRRTIGPAITLSSRFASQLWPTFIDPPQLESALLNLCINARDAMPAGGVIEIIGDNLLLD 460
           LRRTIG  ITL+  F  +     +D  Q ESALLNL INARDA+P GG I I     L D
Sbjct: 367 LRRTIGERITLTFDFTDEPAVARVDVSQFESALLNLVINARDALPEGGHIRI--STFLSD 424

Query: 461 DEQAVALELPASEFVRLSIVDNGSGMSAEVVERAVEPFFTTKPMGQGTGLGLSMTYGFVR 520
             Q    EL A  ++ L + D+G+G+   V+++  +PFFTTKP G+GTGLGLS  YGF  
Sbjct: 425 GSQ--TQELAAGRYIGLCVGDDGTGIEPGVLDKVFDPFFTTKPQGRGTGLGLSSIYGFAL 482

Query: 521 QSGGQLRVLSVPGEGTRIELLLPRHHEQAQAPISKPPRTLLQRSSEAAKRILLVEDQTAL 580
           QSGG   + S  G GT + LLLP      +A ++ P            + +L+VED  ++
Sbjct: 483 QSGGDASIRSTLGVGTEVTLLLPA--ASGEAIVASPIGADSSARLAGHEHVLVVEDMPSV 540

Query: 581 RLVIGEVLEELGYRVDAFENGPSALTHLQSGERPDLLLSDVGLPGGLNGRQVAERFRERY 640
           R+++ E L E GYR     +  +A   L++    +LLL+DVGLP  L+GRQ+A+  R   
Sbjct: 541 RMLVAETLIEAGYRCSQAGDVETAQALLEADTSIELLLTDVGLP-RLSGRQLAQWARRAR 599

Query: 641 PDLKVLLITGYDESAAFSDGQPLQGTLVLTKPFELEALAERVRELLE 687
           P L V+LITGY E+AA  +G   +   ++ KPFE   L  ++R LL+
Sbjct: 600 PGLPVILITGYAENAASREGFIDERMDLVLKPFEAADLLSKIRGLLD 646



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 13/127 (10%)

Query: 566 EAAKRILLVEDQTALRLVIGEVLEELGYRVDAFENGPSALTHLQSGERPDLLLSDVGLPG 625
           E   R+L+V+D    R  +  VLE  GY+V     G   L  L +G   D L+ DV LP 
Sbjct: 2   ERDSRLLIVDDNATTRYAMRRVLERHGYQVLEAGTGSEGLA-LVAG--ADALILDVNLP- 57

Query: 626 GLNGRQVAERFRERYPDLKVLLITGYDESAAFSD------GQPLQGTLVLTKPFELEALA 679
            ++G  +A + R    D    L+     SAA  +      G    G   L  P + + L 
Sbjct: 58  DMSGFDIARQLR---ADPNTALLPLIHVSAASIETNDIITGLDAGGDAYLIHPVDPDVLL 114

Query: 680 ERVRELL 686
             +R LL
Sbjct: 115 ATLRTLL 121



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 2/107 (1%)

Query: 71  NAAYAKHAGIPNVVGQKLREMVPDEADDWVARYGAVLRTGEPLHFEQELIATGHVLSVTT 130
           N A+    G  +     L E+     +  VA   A L+ GE      ++   G     T 
Sbjct: 161 NHAFELLIGAASPAAALLSEVFAPGQEALVAELRAHLQAGERWRTPLQMRVNGETRE-TE 219

Query: 131 FRIEPAEKRQVAVLF-KDVTERRRAEQALQRLNEELEQRVNAALAER 176
           ++I P     + ++F +DVTE+R  E+A ++       ++   +AER
Sbjct: 220 WQISPYRTPGLGLVFVEDVTEQRHRERAQRQEIANTTSKLAHEVAER 266