Pairwise Alignments
Query, 688 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440
Subject, 997 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2
Score = 253 bits (645), Expect = 4e-71
Identities = 194/582 (33%), Positives = 287/582 (49%), Gaps = 34/582 (5%)
Query: 113 LHFEQELIATGHVLSVTTFRIEPAEKRQVAVLFKDVTERRRAEQALQRLNEELEQRVNAA 172
+H Q + +G+ L++ T + + + R+R + L+ L ++ +R A
Sbjct: 436 IHDRQPRVWSGYELALLT-EVTDRSWAHIERVRSAAAVRQREQCFLEELEAKVAERTAAL 494
Query: 173 LAERRLFAELVDHSVVNVHVVDKDLRWLAVNRQARHD----FHLLYGRTPEIGDYL---P 225
+++ S + ++ D L VN A FH L G + P
Sbjct: 495 ARSEANIRAVLETSHLYKAMLAPDGSILYVNATALAGIGARFHQLAGTPFWASPWFAATP 554
Query: 226 GLFEDGTAGQTPILPMWQRALAGEQFIEIGTFGKPPAVRHYELRFNALRDPKGEVQGAFL 285
G+ E I M Q AG+ + P +R ++ + G V
Sbjct: 555 GMPET-------IKAMTQHVAAGDTEHVTISLNMPGGIRIFDFSMRPVLGEDGNVVALVP 607
Query: 286 FAYDISERVQEQERLAKAEAALRQAQKMEAVGQLSGGIAHDFNNLLGGILGAQELMRQRL 345
A DISERV E L+Q KMEA+G L+GGIAHDFNNLL +LG+ EL+R+R+
Sbjct: 608 EALDISERVA-------TEQTLQQLHKMEALGNLTGGIAHDFNNLLMAVLGSLELLRRRM 660
Query: 346 DQSRFDALAPLLELSSSAAQRASSLVHRLLAFSRQQTLQPCSTQVATLVAGMEDLLRRTI 405
AL L++ + + A+R +SL R+L+F+R+Q L + + L+ M LL ++
Sbjct: 661 PPD--PALLRLVDNARAGAERGASLTARMLSFARKQELHKTAIDLPVLIEDMRALLLSSL 718
Query: 406 GPAITLSSRFASQLWPTFIDPPQLESALLNLCINARDAMPAGGVIEIIGDNLLLDDEQAV 465
GP I L QL DP QLE+ALLNL NARDAM G I I + L EQ
Sbjct: 719 GPTIQLEVELPPQLARVKTDPNQLETALLNLAANARDAMAGEGRILITAEECALTSEQN- 777
Query: 466 ALELPASEFVRLSIVDNGSGMSAEVVERAVEPFFTTKPMGQGTGLGLSMTYGFVRQSGGQ 525
LP +V L++ D+G+GM ++RAVEPFFTTK +G+GTGLGLSM +G QSGG+
Sbjct: 778 --GLPIGRYVCLALSDSGTGMDEVTLKRAVEPFFTTKGVGKGTGLGLSMVHGLAEQSGGR 835
Query: 526 LRVLSVPGEGTRIELLLPR--HHEQAQAPISKPPRTLLQRSSEAAKRILLVEDQTALRLV 583
L + S PG GT E+ LP + E+ AP QR A +L V+D +
Sbjct: 836 LMLQSSPGLGTTAEIWLPALDNDEETSAPARSSTPEEKQRQVANALTLLAVDDDELVLFG 895
Query: 584 IGEVLEELGYRVDAFENGPSALTHLQSGERPDLLLSDVGLPGGLNGRQVAERFRERYPDL 643
+LE G+RV + AL L++ + D+L++D +P ++G Q+A RE P L
Sbjct: 896 TAGMLEAAGHRVLTARSAGEALDLLRTNQ-VDMLITDHAMP-LMSGAQLAAVVRETRPQL 953
Query: 644 KVLLITGYDESAAFSDGQPLQGTLVLTKPFELEALAERVREL 685
+LL++GY E + + PL+ L KPF L + V +L
Sbjct: 954 PILLVSGYAELPSATPALPLRR---LAKPFSQNELLDAVEQL 992
Score = 43.5 bits (101), Expect = 5e-08
Identities = 68/264 (25%), Positives = 112/264 (42%), Gaps = 47/264 (17%)
Query: 68 VLANAAYAKHAGI--PNVVGQKLREMVPDEAD--DWVARYGAVLRTGEPLHFEQELIATG 123
++ N AY+ AG P ++G ++RE P+ AD D V + G L G + +QEL+
Sbjct: 71 MIYNDAYSVFAGSRHPQLLGSEVREGWPEVADFNDNVMKVG--LAGGTLSYKDQELVLYR 128
Query: 124 HV--------LSVTTFRIEPAEKRQVAVLFKDVTERRRAEQALQ----RLNEELEQR--V 169
+ L + + A+ V L + TER AE+ LQ RL E EQ +
Sbjct: 129 NGRPERAWMNLDYSPVFDDQAQPAGVIALVVETTERVLAERELQGQQARLQEMFEQAPGL 188
Query: 170 NAALAERRLFAELVDHSVVNVHVVDKDLRWLAVNRQARHDFHLLYGRTPEIG-----DYL 224
A L E+ + + + V V ++D+ + + R PE+ D L
Sbjct: 189 MAMLRGPEHVFEMANPAYLRV-VGERDV----IGKPVREAL-------PEVERQGFIDIL 236
Query: 225 PGLFEDGTAGQTPILPMWQRALAGEQFIEIGTFGKPPAVRHYELRFNALRDPKGEVQGAF 284
++ GTA + + + + GE E R + F + D G V G F
Sbjct: 237 DRVYRSGTAFVGSGIRVGLQRIQGEAEEE----------RLLDFVFQPVTDANGNVAGIF 286
Query: 285 LFAYDISERVQEQERLAKAEAALR 308
+ YD++ER + ++ L + E LR
Sbjct: 287 VEGYDVTERAEAEQALRENEQRLR 310
Score = 39.3 bits (90), Expect = 9e-07
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 40/188 (21%)
Query: 19 QNTLLEQRLASLQAHDQDFYRSLFDTMDEGFCIIEFFDGPHGPLSDYVHVLANAAYAKHA 78
+ L E+ L QA Q+ + ++ ++ GP ++V +AN AY +
Sbjct: 163 ERVLAERELQGQQARLQEMF-------EQAPGLMAMLRGP-----EHVFEMANPAYLRVV 210
Query: 79 GIPNVVGQKLREMVPD-EADDWVARYGAVLRTGEPLHFEQELIATGHVLSVTTFRIEPAE 137
G +V+G+ +RE +P+ E ++ V R+G + +G + + + E E
Sbjct: 211 GERDVIGKPVREALPEVERQGFIDILDRVYRSG------TAFVGSGIRVGLQRIQGEAEE 264
Query: 138 KRQVAVLFK-----------------DVTERRRAEQALQRLNEELEQRVNAALAERRLFA 180
+R + +F+ DVTER AEQAL+ E EQR+ A + A
Sbjct: 265 ERLLDFVFQPVTDANGNVAGIFVEGYDVTERAEAEQALR----ENEQRLRFLDALAKETA 320
Query: 181 ELVDHSVV 188
VD +
Sbjct: 321 RSVDADAI 328