Pairwise Alignments

Query, 688 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1067 a.a., PAS/PAC Sensor Hybrid Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

 Score =  288 bits (737), Expect = 9e-82
 Identities = 204/577 (35%), Positives = 289/577 (50%), Gaps = 45/577 (7%)

Query: 146 KDVTERRRAEQALQRLNEELEQRVNAALAER----RLFAELVDHSVVNVHVVDKDLRWLA 201
           +++ +R+  E     L + LE+ V     ER    R+  EL+     + H+   +  W  
Sbjct: 362 REIADRQAIEAQFLHLTDTLEKMVEERTGERDRLWRVSGELMAVGTADSHIKAVNPAWET 421

Query: 202 VNRQARHDFHLLYGRTPEIGDYLPGLFEDGTAGQTPILPMWQRALAGEQFIEI-GTFG-- 258
           +     HD  LL G    +  + P   E  TA    + P         +  +  GT+   
Sbjct: 422 L---LGHDERLLVGAPMSLLVH-PDDREPSTAALRAMEPQGPPLRFENRLRDSDGTYHWI 477

Query: 259 KPPAVRHYELRFNALRDPKGEVQGAFLFAYDISERVQEQERLAKAEAALRQAQKMEAVGQ 318
               V H  L +   RD   E Q     A    + + +     +AE ALRQAQKME +GQ
Sbjct: 478 AWTIVAHGALFYMVGRDVTEEKQARDALAEAHRQLIAQTAERERAEEALRQAQKMEVIGQ 537

Query: 319 LSGGIAHDFNNLLGGILGAQELMRQRLDQSRFDALA---PLLELSSSAAQRASSLVHRLL 375
           L+GG+AHDFNNLL  ILG  E + + +D +     A    L+E ++  A+RA++L  RLL
Sbjct: 538 LTGGVAHDFNNLLTIILGNLETLIRHIDGASPPDPARVRTLVERATLGAERAAALTQRLL 597

Query: 376 AFSRQQTLQPCSTQVATLVAGMEDLLRRTIGPAITLSSRFASQLWPTFIDPPQLESALLN 435
           AFSR+Q L P    +  L  G+ DLL RTIG  I L +R +        D  QLES +LN
Sbjct: 598 AFSRRQPLDPRPLDLNRLTLGLIDLLHRTIGEKIALDTRLSMVPVGVLADANQLESVVLN 657

Query: 436 LCINARDAMPAGGVIEIIGDNLLLDDEQAVALELPASE---------------FVRLSIV 480
           L +NARDAMP GG        L+L+    + +E P +E               +  L + 
Sbjct: 658 LALNARDAMPTGG-------RLILETTADLVIEAPTAEKRPAKGNPAGAPPGTYAALRVT 710

Query: 481 DNGSGMSAEVVERAVEPFFTTKPMGQGTGLGLSMTYGFVRQSGGQLRVLSVPGEGTRIEL 540
           D G GM A V+ R  +PFFTTK +GQGTGLGLS  YGF++QSGG + + S PG+GT + +
Sbjct: 711 DTGKGMEAGVLARVFDPFFTTKDVGQGTGLGLSQAYGFIKQSGGHIGIESEPGQGTTVTI 770

Query: 541 LLPR---------HHEQAQAPISKPPRTLLQRSSEAAKRILLVEDQTALRLVIGEVLEEL 591
           LLPR           ++ + P +     +     + +  +L+VED  ++R      L EL
Sbjct: 771 LLPRLEGALPLPEESDRDETPAALGGLEITPPPGDPSILLLVVEDDPSVRAHSTASLREL 830

Query: 592 GYRVDAFENGPSALTHLQSGERPDLLLSDVGLPGGLNGRQVAERFRERYPDLKVLLITGY 651
           GY+V    NG  AL HL +     L+ +D+GLPGG++GRQ+AE  R   PDL V+L TGY
Sbjct: 831 GYQVIEAGNGAEALGHLAAHPDVALMFTDIGLPGGMDGRQLAELARRNRPDLAVVLTTGY 890

Query: 652 DESAAFSDGQPLQGTLVLTKPFELEALAERVRELLEP 688
              A   +        +LTKPF   ALA +V E+L P
Sbjct: 891 ARDALNGNVPLAPRMALLTKPFSFTALALKVHEVLPP 927



 Score = 58.9 bits (141), Expect = 1e-12
 Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 12/129 (9%)

Query: 556  PPRTLLQRSS-EAAKRILLVEDQTALRLVIGEVLEELGYRVDAFENGPSALTHLQSGERP 614
            PPR   Q S+ +    +LLVED   + L   ++L  LG  VD   +   AL    S   P
Sbjct: 926  PPRPAPQSSAPQGPVTVLLVEDDPLVSLAAADLLLSLGCAVDQAYSVADALAQA-SAATP 984

Query: 615  DLLLSDVGLPGGLNGRQVAERFRERYPDLKVLLITGYDES---AAFSDGQPLQGTLVLTK 671
            D+ + D+GLP G  G  +A+  R+R P L +++ +GYD S   A F D   L+    L K
Sbjct: 985  DVAVIDIGLPDG-RGDDLAQTLRQRLPGLPIVIASGYDRSEIDARFGDDPRLR---FLGK 1040

Query: 672  PF---ELEA 677
            P+   +LEA
Sbjct: 1041 PYLDSQLEA 1049



 Score = 26.9 bits (58), Expect = 0.005
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 83  VVGQKLREMV-PDEADDWVARYGAVLRTGEPLHFEQEL---IATGHVLSVTTFRIEPAEK 138
           +VG  +  +V PD+ +   A   A+   G PL FE  L     T H ++ T      A  
Sbjct: 430 LVGAPMSLLVHPDDREPSTAALRAMEPQGPPLRFENRLRDSDGTYHWIAWTIV----AHG 485

Query: 139 RQVAVLFKDVTERRRAEQALQRLNEEL 165
               ++ +DVTE ++A  AL   + +L
Sbjct: 486 ALFYMVGRDVTEEKQARDALAEAHRQL 512