Pairwise Alignments

Query, 688 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 797 a.a., PAS-family sensor histidine kinase from Caulobacter crescentus NA1000

 Score =  354 bits (909), Expect = e-102
 Identities = 235/562 (41%), Positives = 320/562 (56%), Gaps = 31/562 (5%)

Query: 141 VAVLFKDVTERRRAEQALQRLNEELEQRVNAALAERRLFAELVDHSVVNVHVVDKDLRWL 200
           V VL  D+T R R E+A  R +E   Q +  ++ E     E  D      H  D D   +
Sbjct: 248 VLVLCNDITARVRQERA-HRADERRYQALFESMDEGFCVIEFFD----GPHGPDSDYVHI 302

Query: 201 AVNRQARHDFHL----LYGRT-----PEIGDYLPGLFEDGTAGQTPILPMWQRALAGEQF 251
             N  A ++ H     + G+T     PE  D     +        PI    Q  +A  + 
Sbjct: 303 MAN--AAYERHAGIFNVVGQTLREVVPEEADAWVARYGAVLRTGEPIR-FEQELVATGRH 359

Query: 252 IEIGTFG-KPPAVRHYELRFN---ALRDPKGEVQGAF-LFAYDISERVQEQERLAKAEAA 306
           +E+ +F  +PP ++   + F    A +  + +++G        I++ + E+ER    E A
Sbjct: 360 LELSSFRIEPPELKQVAVLFQDVTARKRAEADLRGLNETLESRIAQALAERER---TEEA 416

Query: 307 LRQAQKMEAVGQLSGGIAHDFNNLLGGILGAQELMRQRLDQSRFDALAPLLELSSSAAQR 366
           LRQAQKMEAVGQL+GG+AHDFNNLL GI G+ E++  RL Q R   +   L     AA+R
Sbjct: 417 LRQAQKMEAVGQLTGGLAHDFNNLLAGISGSFEMIGARLAQGRAGEVERYLTAGQGAARR 476

Query: 367 ASSLVHRLLAFSRQQTLQPCSTQVATLVAGMEDLLRRTIGPAITLSSRFASQLWPTFIDP 426
           A++L HRLLAFSR+QTL P    V  L+    +L+RRT+GP+I + +  A+ LWPT +D 
Sbjct: 477 AAALTHRLLAFSRRQTLAPRPMVVNRLLPDFVELVRRTVGPSIKVENVAATGLWPTLVDA 536

Query: 427 PQLESALLNLCINARDAMPAGGVIEIIGDNLLLDDEQAVALELPASEFVRLSIVDNGSGM 486
            QLE+ALLNLCINARDAMP GG I I   N  LD   A    L   ++V +S+ D G+G+
Sbjct: 537 NQLENALLNLCINARDAMPDGGKIMIETSNRWLDGPAAREHGLDPGQYVSVSVSDTGTGI 596

Query: 487 SAEVVERAVEPFFTTKPMGQGTGLGLSMTYGFVRQSGGQLRVLSVPGEGTRIELLLPRH- 545
               +ER  +PFFTTKP+GQGTGLGLSM YGF RQS G +R+ S  G GT + L LPRH 
Sbjct: 597 DKATLERVFDPFFTTKPIGQGTGLGLSMVYGFARQSNGHVRIYSEVGHGTTVCLYLPRHL 656

Query: 546 -HEQAQAPISKPPRTLLQRSSEAAKRILLVEDQTALRLVIGEVLEELGYRVDAFENGPSA 604
             E+ +   + P    +Q    A K +L+V+D+  +R+++ + L ELGY      +G + 
Sbjct: 657 GEEEVETSTTAPYAPHVQ----ADKTVLVVDDEPTVRMLVVDTLSELGYACLEAPDGAAG 712

Query: 605 LTHLQSGERPDLLLSDVGLPGGLNGRQVAERFRERYPDLKVLLITGYDESAAFSDGQPLQ 664
           L  LQSG + DLL++DVGLPGGLNGRQVA+  R   P LKVL ITGY E+A  + G    
Sbjct: 713 LRILQSGRQVDLLITDVGLPGGLNGRQVADGARALLPRLKVLFITGYAENAVLNHGHIEY 772

Query: 665 GTLVLTKPFELEALAERVRELL 686
           G  VLTKPF +  L  RV  +L
Sbjct: 773 GMEVLTKPFAVSDLTGRVDRML 794



 Score =  211 bits (537), Expect = 1e-58
 Identities = 104/153 (67%), Positives = 127/153 (83%), Gaps = 2/153 (1%)

Query: 26  RLASLQAH--DQDFYRSLFDTMDEGFCIIEFFDGPHGPLSDYVHVLANAAYAKHAGIPNV 83
           R+   +AH  D+  Y++LF++MDEGFC+IEFFDGPHGP SDYVH++ANAAY +HAGI NV
Sbjct: 258 RVRQERAHRADERRYQALFESMDEGFCVIEFFDGPHGPDSDYVHIMANAAYERHAGIFNV 317

Query: 84  VGQKLREMVPDEADDWVARYGAVLRTGEPLHFEQELIATGHVLSVTTFRIEPAEKRQVAV 143
           VGQ LRE+VP+EAD WVARYGAVLRTGEP+ FEQEL+ATG  L +++FRIEP E +QVAV
Sbjct: 318 VGQTLREVVPEEADAWVARYGAVLRTGEPIRFEQELVATGRHLELSSFRIEPPELKQVAV 377

Query: 144 LFKDVTERRRAEQALQRLNEELEQRVNAALAER 176
           LF+DVT R+RAE  L+ LNE LE R+  ALAER
Sbjct: 378 LFQDVTARKRAEADLRGLNETLESRIAQALAER 410



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 239 LPMWQRALAGEQFIE--IGTFGKPPAVRHYELRFNALRDPKGEVQGAFLFAYDISERVQE 296
           LP+ +RA AGE  ++  +G            L F+ +   +G+V G  +   DI+ RV+ 
Sbjct: 202 LPLLRRARAGESVVQECVGFTRDNGEAAWCNLMFSPVCGDEGQVLGVLVLCNDITARVR- 260

Query: 297 QERLAKAEAALRQA 310
           QER  +A+    QA
Sbjct: 261 QERAHRADERRYQA 274