Pairwise Alignments

Query, 553 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 801 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  243 bits (620), Expect = 2e-68
 Identities = 150/407 (36%), Positives = 222/407 (54%), Gaps = 22/407 (5%)

Query: 122 RHYEIRYHPWLDAQQRIQGGYLF--AYDITQRVTEQERLQQA--------------EEAL 165
           RH +  Y  WL       GG ++  A DIT  +   ++L +A              E  L
Sbjct: 361 RHRDGSYR-WLSWSLVADGGRIYSAARDITSEIAAVDKLAEANRELRAQIQERERVEATL 419

Query: 166 RQAQKMEAVGQLTGGIAHDFNNLLASILGALELAGQRLVQQRLADTT-QLLELSRHNAQR 224
           +Q Q++EAVGQLT G+AHDFNNLL  IL +       L Q   A+ + + L+  R + +R
Sbjct: 420 QQMQRLEAVGQLTAGVAHDFNNLLTVILTSASFLQNDLEQGAPAERSLRRLQYIRESGER 479

Query: 225 AAALVQRLLAFSRQQTLVPQRVDVQQLVAGMHDLISSSTGPYVDYHDQTHAGLWPIRIDA 284
            A L  +LLAF+R+Q L P  +D+   +  +  L+ S+ G  V     T A +W   +D 
Sbjct: 480 GATLTSQLLAFARRQQLTPTAIDLNDTLVSLLSLLKSTLGGSVSIETDTQANIWHALVDP 539

Query: 285 QQLENALLNLCINARDAMPLGGTLSIGCANVEVQGAEARQLGLAAGRFLRIRVEDTGMGM 344
            Q+E  +LNL INARDAM   G L++G  NV +     R    + G ++ + V DTG GM
Sbjct: 540 TQIEMIILNLAINARDAMGDSGRLTLGTRNVVITEPALRAEDPSPGEYVVLSVTDTGTGM 599

Query: 345 SKAVMQRALEPFFTTKPLGQGTGLGLSMVYGFVRQSGGQLVIDSTLGQGTAINLYLPCDE 404
           S+ V+ +A EPFFTTK +G+G+GLGL+ V+GF +QSGG   I+S  G GT + ++LP  E
Sbjct: 600 SEEVLSKAFEPFFTTKEVGKGSGLGLAQVFGFAKQSGGGARIESRPGAGTTVKVFLPRTE 659

Query: 405 SIAAASPSPHVEGPAPAASLQQRVCKVMLVEDEPALRLVMLEVLLDQGHEVQAFEDGRQA 464
             AA  P+  +   +   + Q R   ++LV+D+ A+R V  ++L + G  V   + G  A
Sbjct: 660 PPAATEPTAALSAGSQEDNSQHR---ILLVDDDHAVREVTAQMLQNLGFAVIEADSGEHA 716

Query: 465 YKALQEAPAPDLLITDVGLPGGIDGYQLADACRGIAPHAAVLLITGY 511
            + L E    DLL+ D  +P G++G +LA A R   P   V+ +TGY
Sbjct: 717 LQLLGEGIEVDLLLADFAMP-GMNGGELARAVRVGQPELPVIFVTGY 762