Pairwise Alignments

Query, 553 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 928 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  262 bits (669), Expect = 5e-74
 Identities = 160/448 (35%), Positives = 243/448 (54%), Gaps = 29/448 (6%)

Query: 122 RHYEIRYHPWLDAQQRIQGGYLFAYDITQRVTEQERLQQAEE------------------ 163
           R+    + P     +++ G +   +D+T +V  Q+ LQ++ E                  
Sbjct: 373 RYVNFIFQPVFREDEQVSGIFCQGHDVTAQVLAQQELQRSSERLQELVEERTRELELSRQ 432

Query: 164 ALRQAQKMEAVGQLTGGIAHDFNNLLASILGALELAGQRLVQQRLADTTQLLELSRHNAQ 223
           AL Q+QK+EA+G+LTGG+AHDFNN+L  I G L+L    +   R A   + ++ +    +
Sbjct: 433 ALYQSQKLEAIGKLTGGVAHDFNNVLQVIAGNLQLLQPLVDDNRTA--AKRVDAAGSAVE 490

Query: 224 RAAALVQRLLAFSRQQTLVPQRVDVQQLVAGMHDLISSSTGPYVDYHDQTHAGLWPIRID 283
           R A L ++LLAF+R+Q L PQ  ++ +L+  + +L+  + G  ++       GLW   +D
Sbjct: 491 RGAKLARQLLAFARRQPLRPQPTNLGRLLRDLDELLRQALGERIEIETVVAGGLWTTMVD 550

Query: 284 AQQLENALLNLCINARDAMPLGG--TLSIGCANVEVQGAEARQLGLAAGRFLRIRVEDTG 341
             QLE  +LNL INARDAMP GG  TL +G + ++   AE  Q  +  G+++ + V DTG
Sbjct: 551 PNQLEQVVLNLAINARDAMPDGGKLTLELGNSMLDEHYAET-QSDVTPGQYVLLAVSDTG 609

Query: 342 MGMSKAVMQRALEPFFTTKPLGQGTGLGLSMVYGFVRQSGGQLVIDSTLGQGTAINLYLP 401
           +GM   ++++A EPFF+TKP G GTGLGLSM YGF +QSGG + + S  G GT + LYLP
Sbjct: 610 VGMPAEIIEQAFEPFFSTKPEGHGTGLGLSMAYGFAKQSGGHIRLYSEEGTGTTVKLYLP 669

Query: 402 CDESIAAASPSPHVEGPAPAASLQQRVCKVMLVEDEPALRLVMLEVLLDQGHEVQAFEDG 461
             E        P   GP    S       +++VED+  ++  ++E+L   G+ V    D 
Sbjct: 670 RTEQ-PEVQAQPSTVGPVVGGSE-----TILVVEDDLPVQATVIELLTGLGYSVLRANDA 723

Query: 462 RQAYKALQEAPAPDLLITDVGLPGGIDGYQLADACRGIAPHAAVLLITGYDLAHSTAKAR 521
           + A   LQ     DLL TDV +PG +   +LA   R + P  AVL  +GY         R
Sbjct: 724 QSALSILQSGLPIDLLFTDVVMPGPLSSTELARQARLLLPDIAVLFTSGYTRNAVVHGGR 783

Query: 522 PHRRTELLAKPFDLQALAQALERLLGST 549
                ELL+KP+  + LA+ + +LLG+T
Sbjct: 784 LDPGVELLSKPYRQEDLARKVRQLLGAT 811



 Score = 46.2 bits (108), Expect = 6e-09
 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 431 VMLVEDEPALRLVMLEVLLDQGHEVQAFEDGRQAYKALQEAPAPDLLITDVGLPGGIDGY 490
           VM+VED+P L  +  E++ + GH    + +   A +AL E    D L+ DV LPG   G 
Sbjct: 823 VMVVEDQPQLLALTCEMVEELGHRACGYANAELAAQALHEQRF-DQLLLDVNLPGR-SGP 880

Query: 491 QLADACRGIAPHAAVLLITGYDLAHSTAKARPHRRTELLAKPFDLQALAQALE 543
           + A       P   ++ ++G     S   AR       L KPF    LA+ L+
Sbjct: 881 EFAAEALATQPWLRLVFVSGEGRIESKLPARS------LPKPFSFDQLAEILQ 927