Pairwise Alignments

Query, 553 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 648 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  254 bits (649), Expect = 7e-72
 Identities = 186/569 (32%), Positives = 284/569 (49%), Gaps = 54/569 (9%)

Query: 1   MQPDTLASFARLQARVAELEARLAAREDNVQAHDRLLGELLDNSVANVFAADRSMRLLAI 60
           + PD L +  R   RV + E  L   E   +       E+  +  A +   D  + L   
Sbjct: 108 VDPDVLLATLRTLLRVRDTERALRDSEARFR-------EIFIHVAAPIAVLDADLGLHEC 160

Query: 61  NRTARETFERYRGFVPQVGDYVPQFLTDQPDIMGRLAPIWPRILAGEAFIDTVTFGLDDA 120
           N      FE   G        + +      + +  +A +   + AGE +   +   ++  
Sbjct: 161 NHA----FELLIGAASPAAALLSEVFAPGQEAL--VAELRAHLQAGERWRTPLQMRVNGE 214

Query: 121 PRHYEIRYHPWLDAQQRIQG-GYLFAYDIT-QRVTEQERLQQ-----------------A 161
            R  E +  P+     R  G G +F  D+T QR  E+ + Q+                  
Sbjct: 215 TRETEWQISPY-----RTPGLGLVFVEDVTEQRHRERAQRQEIANTTSKLAHEVAERART 269

Query: 162 EEALRQAQKMEAVGQLTGGIAHDFNNLLASILGALELAGQRLVQQRLADTTQLLELSRHN 221
           EE L QAQKM+A+G+LTGGIAHDFNNLL  I+  +EL  QR+++ R     +  + S  +
Sbjct: 270 EEQLLQAQKMDALGKLTGGIAHDFNNLLTGIITGIELMKQRIIEGRADSVLRFADASLSS 329

Query: 222 AQRAAALVQRLLAFSRQQTLVPQRVDVQQLVAGMHDLISSSTGPYV----DYHDQTHAGL 277
           A+ AA+L  RLLAF+R+Q L  + +++ + +  + DL+  + G  +    D+ D+     
Sbjct: 330 ARSAASLTNRLLAFARKQPLDARALNINERIRSLEDLLRRTIGERITLTFDFTDEPAVA- 388

Query: 278 WPIRIDAQQLENALLNLCINARDAMPLGGTLSIGCANVEVQGAEARQLGLAAGRFLRIRV 337
              R+D  Q E+ALLNL INARDA+P GG + I  +     G++ ++  LAAGR++ + V
Sbjct: 389 ---RVDVSQFESALLNLVINARDALPEGGHIRI--STFLSDGSQTQE--LAAGRYIGLCV 441

Query: 338 EDTGMGMSKAVMQRALEPFFTTKPLGQGTGLGLSMVYGFVRQSGGQLVIDSTLGQGTAIN 397
            D G G+   V+ +  +PFFTTKP G+GTGLGLS +YGF  QSGG   I STLG GT + 
Sbjct: 442 GDDGTGIEPGVLDKVFDPFFTTKPQGRGTGLGLSSIYGFALQSGGDASIRSTLGVGTEVT 501

Query: 398 LYLPCDESIAAASPSPHVEGPAPAASLQQRVCKVMLVEDEPALRLVMLEVLLDQGHEVQA 457
           L LP     A  +     +  A  A  +     V++VED P++R+++ E L++ G+    
Sbjct: 502 LLLPAASGEAIVASPIGADSSARLAGHEH----VLVVEDMPSVRMLVAETLIEAGYRCSQ 557

Query: 458 FEDGRQAYKALQEAPAPDLLITDVGLPGGIDGYQLADACRGIAPHAAVLLITGYDLAHST 517
             D   A   L+   + +LL+TDVGLP  + G QLA   R   P   V+LITGY    ++
Sbjct: 558 AGDVETAQALLEADTSIELLLTDVGLP-RLSGRQLAQWARRARPGLPVILITGYAENAAS 616

Query: 518 AKARPHRRTELLAKPFDLQALAQALERLL 546
            +     R +L+ KPF+   L   +  LL
Sbjct: 617 REGFIDERMDLVLKPFEAADLLSKIRGLL 645