Pairwise Alignments

Query, 553 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 853 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  341 bits (875), Expect = 6e-98
 Identities = 200/457 (43%), Positives = 281/457 (61%), Gaps = 42/457 (9%)

Query: 118 DDAPRHYEIRYHPWLDAQQRIQGGYLFAYDITQRVTEQERL------------------- 158
           D  PR   + Y P  D    + G ++ A D+T+R   ++ L                   
Sbjct: 393 DGQPRRMLVHYLPRRDCHANVLGFFVMALDVTERWRAEQALRELNETLESRIQERTQALA 452

Query: 159 -------------QQAEEALRQAQKMEAVGQLTGGIAHDFNNLLASILGALELAGQRLVQ 205
                        +QA+EALRQAQKMEAVGQLTGGIAHDFNN+L  I+G L+L  + +  
Sbjct: 453 EVYERLLKEMASREQAQEALRQAQKMEAVGQLTGGIAHDFNNMLTGIIGGLDLIQRYIQS 512

Query: 206 QRLADTTQLLELSRHNAQRAAALVQRLLAFSRQQTLVPQRVDVQQLVAGMHDLISSSTGP 265
            R  +T + ++ +  +A RAAAL  RLLAF+R+Q L  +RV++ QL+  MHDL+S + G 
Sbjct: 513 GRHGETQRFIDAAVTSANRAAALTHRLLAFARRQPLNLKRVELNQLIESMHDLLSRTLGR 572

Query: 266 YVDYHDQTHAGLWPIRIDAQQLENALLNLCINARDAMPLGGTLSIGCANVEVQGAEARQL 325
           ++   ++   GLWP+  D  QLE+ALLNL INARDAMP GG+L +   NVE+  ++    
Sbjct: 573 HIHIDNRLQQGLWPVSSDENQLESALLNLVINARDAMPDGGSLLLETRNVELY-SQGEVG 631

Query: 326 GLAAGRFLRIRVEDTGMGMSKAVMQRALEPFFTTKPLGQGTGLGLSMVYGFVRQSGGQLV 385
            LAAGR++ +R+ D+G GMS  V+    EPFFTTKP+GQGTGLGLSMVYGF RQ+GG + 
Sbjct: 632 DLAAGRYVILRLTDSGCGMSAKVLASVFEPFFTTKPIGQGTGLGLSMVYGFTRQAGGHIQ 691

Query: 386 IDSTLGQGTAINLYLPC-DESIAAASPSPHVEGPAPAASLQQRVCKVMLVEDEPALRLVM 444
           I S  G+GT ++LYLP  +E   AA P+  +EGP  A   +     V++VED+PA+RL++
Sbjct: 692 IASEPGEGTQVSLYLPVYEEEGVAALPAKEIEGPLRAKQGE----TVLVVEDDPAVRLLV 747

Query: 445 LEVLLDQGHEVQAFEDGRQAYKALQEAPAPDLLITDVGLPGGIDGYQLADACRGIAPHAA 504
           ++VL   G++     DG  A + L+ + A D+L+TDVGLP G++G QLADA R   P   
Sbjct: 748 IDVLEMLGYQALEAADGNAAIRILESSAAVDMLVTDVGLP-GMNGRQLADAARQQRPGLP 806

Query: 505 VLLITGY-DLAHSTAKARPHRRTELLAKPFDLQALAQ 540
           VL +TGY   A S+    P    ++++KPF+L ALA+
Sbjct: 807 VLFMTGYAKQAASSDFLEP--GMDMISKPFNLDALAK 841