Pairwise Alignments

Query, 553 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 997 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  243 bits (620), Expect = 3e-68
 Identities = 178/536 (33%), Positives = 267/536 (49%), Gaps = 28/536 (5%)

Query: 12  LQARVAELEARLAAREDNVQAHDRLLGELLDNS--VANVFAADRSMRLLAINRTARETFE 69
           L+A+VAE  A LA  E N++A       +L+ S     + A D S  +L +N TA     
Sbjct: 483 LEAKVAERTAALARSEANIRA-------VLETSHLYKAMLAPDGS--ILYVNATALAGIG 533

Query: 70  RYRGFVPQVGDYVPQFLTDQPDIMGRLAPIWPRILAGEAFIDTVTFGLDDAPRHYEIRYH 129
                +     +   +    P +   +  +   + AG+    T++  +    R ++    
Sbjct: 534 ARFHQLAGTPFWASPWFAATPGMPETIKAMTQHVAAGDTEHVTISLNMPGGIRIFDFSMR 593

Query: 130 PWLDAQQRIQGGYLFAYDITQRVTEQERLQQAEEALRQAQKMEAVGQLTGGIAHDFNNLL 189
           P L     +      A DI++RV         E+ L+Q  KMEA+G LTGGIAHDFNNLL
Sbjct: 594 PVLGEDGNVVALVPEALDISERVA-------TEQTLQQLHKMEALGNLTGGIAHDFNNLL 646

Query: 190 ASILGALELAGQRLVQQRLADTTQLLELSRHNAQRAAALVQRLLAFSRQQTLVPQRVDVQ 249
            ++LG+LEL  +R+         +L++ +R  A+R A+L  R+L+F+R+Q L    +D+ 
Sbjct: 647 MAVLGSLELLRRRMPPDPAL--LRLVDNARAGAERGASLTARMLSFARKQELHKTAIDLP 704

Query: 250 QLVAGMHDLISSSTGPYVDYHDQTHAGLWPIRIDAQQLENALLNLCINARDAMPLGGTLS 309
            L+  M  L+ SS GP +    +    L  ++ D  QLE ALLNL  NARDAM   G + 
Sbjct: 705 VLIEDMRALLLSSLGPTIQLEVELPPQLARVKTDPNQLETALLNLAANARDAMAGEGRIL 764

Query: 310 IGCANVEVQGAEARQLGLAAGRFLRIRVEDTGMGMSKAVMQRALEPFFTTKPLGQGTGLG 369
           I     E     + Q GL  GR++ + + D+G GM +  ++RA+EPFFTTK +G+GTGLG
Sbjct: 765 I---TAEECALTSEQNGLPIGRYVCLALSDSGTGMDEVTLKRAVEPFFTTKGVGKGTGLG 821

Query: 370 LSMVYGFVRQSGGQLVIDSTLGQGTAINLYLPCDESIAAASPSPHVEGPAPAASLQQRVC 429
           LSMV+G   QSGG+L++ S+ G GT   ++LP  ++    S       P           
Sbjct: 822 LSMVHGLAEQSGGRLMLQSSPGLGTTAEIWLPALDNDEETSAPARSSTPEEKQRQVANAL 881

Query: 430 KVMLVEDEPALRLVMLEVLLDQGHEVQAFEDGRQAYKALQEAPAPDLLITDVGLPGGIDG 489
            ++ V+D+  +      +L   GH V       +A   L+     D+LITD  +P  + G
Sbjct: 882 TLLAVDDDELVLFGTAGMLEAAGHRVLTARSAGEALDLLRTNQV-DMLITDHAMP-LMSG 939

Query: 490 YQLADACRGIAPHAAVLLITGYDLAHSTAKARPHRRTELLAKPFDLQALAQALERL 545
            QLA   R   P   +LL++GY    S   A P RR   LAKPF    L  A+E+L
Sbjct: 940 AQLAAVVRETRPQLPILLVSGYAELPSATPALPLRR---LAKPFSQNELLDAVEQL 992



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 116 GLDDAPRHYEIRYHPWLDAQQRIQGGYLFAYDITQRVTEQERLQQAEEALR 166
           G  +  R  +  + P  DA   + G ++  YD+T+R   ++ L++ E+ LR
Sbjct: 260 GEAEEERLLDFVFQPVTDANGNVAGIFVEGYDVTERAEAEQALRENEQRLR 310