Pairwise Alignments

Query, 553 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1067 a.a., PAS/PAC Sensor Hybrid Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

 Score =  274 bits (700), Expect = 1e-77
 Identities = 177/446 (39%), Positives = 242/446 (54%), Gaps = 26/446 (5%)

Query: 123 HYEIRYHPWLDAQQRIQGGYLFAYDITQRVTEQERLQQAEEALRQAQKMEAVGQLTGGIA 182
           H  + Y    D  +  Q     A    Q + +    ++AEEALRQAQKME +GQLTGG+A
Sbjct: 484 HGALFYMVGRDVTEEKQARDALAEAHRQLIAQTAERERAEEALRQAQKMEVIGQLTGGVA 543

Query: 183 HDFNNLLASILGALELAGQRLVQQRLADTTQ---LLELSRHNAQRAAALVQRLLAFSRQQ 239
           HDFNNLL  ILG LE   + +      D  +   L+E +   A+RAAAL QRLLAFSR+Q
Sbjct: 544 HDFNNLLTIILGNLETLIRHIDGASPPDPARVRTLVERATLGAERAAALTQRLLAFSRRQ 603

Query: 240 TLVPQRVDVQQLVAGMHDLISSSTGPYVDYHDQTHAGLWPIRI--DAQQLENALLNLCIN 297
            L P+ +D+ +L  G+ DL+  + G  +     T   + P+ +  DA QLE+ +LNL +N
Sbjct: 604 PLDPRPLDLNRLTLGLIDLLHRTIGEKIAL--DTRLSMVPVGVLADANQLESVVLNLALN 661

Query: 298 ARDAMPLGGTLS--------IGCANVEVQGAEARQLGLAAGRFLRIRVEDTGMGMSKAVM 349
           ARDAMP GG L         I     E + A+    G   G +  +RV DTG GM   V+
Sbjct: 662 ARDAMPTGGRLILETTADLVIEAPTAEKRPAKGNPAGAPPGTYAALRVTDTGKGMEAGVL 721

Query: 350 QRALEPFFTTKPLGQGTGLGLSMVYGFVRQSGGQLVIDSTLGQGTAINLYLP-CDESIAA 408
            R  +PFFTTK +GQGTGLGLS  YGF++QSGG + I+S  GQGT + + LP  + ++  
Sbjct: 722 ARVFDPFFTTKDVGQGTGLGLSQAYGFIKQSGGHIGIESEPGQGTTVTILLPRLEGALPL 781

Query: 409 ASPSPHVEGPAPAASLQ------QRVCKVMLVEDEPALRLVMLEVLLDQGHEVQAFEDGR 462
              S   E PA    L+           +++VED+P++R      L + G++V    +G 
Sbjct: 782 PEESDRDETPAALGGLEITPPPGDPSILLLVVEDDPSVRAHSTASLRELGYQVIEAGNGA 841

Query: 463 QAYKALQEAPAPDLLITDVGLPGGIDGYQLADACRGIAPHAAVLLITGY--DLAHSTAKA 520
           +A   L   P   L+ TD+GLPGG+DG QLA+  R   P  AV+L TGY  D  +     
Sbjct: 842 EALGHLAAHPDVALMFTDIGLPGGMDGRQLAELARRNRPDLAVVLTTGYARDALNGNVPL 901

Query: 521 RPHRRTELLAKPFDLQALAQALERLL 546
            P  R  LL KPF   ALA  +  +L
Sbjct: 902 AP--RMALLTKPFSFTALALKVHEVL 925



 Score = 62.4 bits (150), Expect = 9e-14
 Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 418  PAPAASLQQRVCKVMLVEDEPALRLVMLEVLLDQGHEVQAFEDGRQAYK---ALQEAPA- 473
            PAP +S  Q    V+LVED+P + L   ++LL  G  V       QAY    AL +A A 
Sbjct: 929  PAPQSSAPQGPVTVLLVEDDPLVSLAAADLLLSLGCAVD------QAYSVADALAQASAA 982

Query: 474  -PDLLITDVGLPGGIDGYQLADACRGIAPHAAVLLITGYDLAHSTAKARPHRRTELLAKP 532
             PD+ + D+GLP G  G  LA   R   P   +++ +GYD +   A+     R   L KP
Sbjct: 983  TPDVAVIDIGLPDG-RGDDLAQTLRQRLPGLPIVIASGYDRSEIDARFGDDPRLRFLGKP 1041

Query: 533  FDLQALAQALERLLG 547
            +    L  AL   LG
Sbjct: 1042 YLDSQLEAALTGALG 1056