Pairwise Alignments

Query, 335 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 314 a.a., putative HTH-type transcriptional regulator, AraC family from Phaeobacter inhibens DSM 17395

 Score =  118 bits (295), Expect = 2e-31
 Identities = 88/305 (28%), Positives = 149/305 (48%), Gaps = 13/305 (4%)

Query: 28  APYRVDFILLEHFSMASFTVAMDVLVTANLLRADS-FQFTPLSLDGDRVLSDLGLELVAT 86
           AP ++D +L + FS       ++ L  AN L     + +  +++DG   +S   +E+ A 
Sbjct: 10  APQQIDLLLFDQFSGHCLANTVEPLRAANTLAGRQVYSWRFVTVDGGTAMSSARMEVTAQ 69

Query: 87  ELSAAALKELDLLVVC---GGLRTPLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRAGV 143
                A  E D+L+     G LR   +     R L         L G   GAW L  AG+
Sbjct: 70  MPLHKA--EGDMLIAMPSYGYLRHTTEATA--RGLRAAQQRYGVLAGFDTGAWLLAAAGL 125

Query: 144 LDDYGCSIHPEQRASLSERSPQTRITPASFTLDRDRLSAASPNGAMELMLGLVRRLYGDG 203
           LD Y  +IH  +  + ++  P  +     F  DRDRL+++    A + +L ++ + +G  
Sbjct: 126 LDGYRATIHSSEMEAFADMFPAVQAETHRFLWDRDRLTSSGAMAAFDGILDMIAQQHGQA 185

Query: 204 LAEGVEEI-LSFSGARYRQVGPGAKKSMSLHLRTIVELMENNLEETLSLDQLAAYSGRSR 262
           L   V  + LS S +   +  P    S++  +R     ME NLE  L L+++A ++GRS 
Sbjct: 186 LRLDVAALFLSESQSGSDRSSPVRSASVARAIRA----MEANLETPLPLEEVARHAGRSL 241

Query: 263 RQIDRLFQAQLGTSPRRYYMELRITKSRRLLQYSDLSVMEVAVACGFVSVSHFSKCYAAY 322
           R + R  + +LGT+P+  Y  LR+ +++RL+  +D SV E+AV CG+   S  ++ + + 
Sbjct: 242 RDLARRTRGELGTTPQALYRHLRLKQAKRLVLETDFSVAEIAVRCGYEDPSALTRAFRSA 301

Query: 323 FGYPP 327
           F   P
Sbjct: 302 FATTP 306