Pairwise Alignments

Query, 392 a.a., transposase from Pseudomonas putida KT2440

Subject, 337 a.a., transposase IS116/IS110/IS902 family protein (RefSeq) from Shewanella loihica PV-4

 Score =  207 bits (527), Expect = 4e-58
 Identities = 127/339 (37%), Positives = 189/339 (55%), Gaps = 11/339 (3%)

Query: 45  TTICVDLAKQVFQLAGEDATGRVIYEDRIKSRQAFHDFLLRLPTTVAVLMECGPGAQAWA 104
           T I +DLAK V Q+ G +  G+ ++   +K  Q     L++ P  V + ME   G+  W 
Sbjct: 4   TLIGIDLAKNVLQVCGVNQVGKTLFNRTVKRTQLLKT-LVQYPDAV-IAMEACSGSNYWG 61

Query: 105 RLLQAKGNPVRILPAQRVAEHRSGAKNDRNDCYAILRAGRDTSIASIPIKSTTALAIQAL 164
           R L ++G  V+++P Q V     G KNDRND +AI  A    +I  +  ++   + I   
Sbjct: 62  RELLSRGFEVKLIPPQHVKPFVKGNKNDRNDAFAICEAAMRPNIIFVKPRTLAQVDIIIS 121

Query: 165 HRIRRGNIKRHTALGNQIRGLLLEHGVSMPQGDAAINKHVPRALEDASLPLPDLLRELLD 224
           HRIR   I+  TAL NQIRGLL E+G+ +P+G   +N  +P  LEDA   L    R  + 
Sbjct: 122 HRIRERRIRVRTALTNQIRGLLSEYGIVIPKGRDPLNLALPELLEDADNSLTTTARRYIR 181

Query: 225 ELLMDWLSLGERITALSRRLEATAQEDKVAQRLITIRGVGPIIATAIVAKQTDPSRFASG 284
           ELL +  ++   I AL + +   A+  +  +RL  IRGV  IIATA V+   D S + +G
Sbjct: 182 ELLDELYAINASIKALEKEIRLQARNHEDTKRLTAIRGVAEIIATASVSFAGDGSGYQNG 241

Query: 285 RMYSAFFGIVPDQHSSGNKIRLGKMSKRGDGYIRSLMIQGAHSVLSQLRPDSDQPDDRRL 344
           R +SA  G+VP + SSG K +LG ++KRG+ Y+R  +IQGA SV+   + + D     RL
Sbjct: 242 RHFSANLGLVPKEFSSGGKQKLGAITKRGNSYLRRQLIQGAWSVIRYAKNNDD-----RL 296

Query: 345 LRW----LSRLGRKEAAIRLANRNLRIIWALLQSDQVYQ 379
             W    + R G+++AA+ +AN+  RIIWA+L     Y+
Sbjct: 297 SVWARKVIERRGKQKAAVAVANKLARIIWAMLYYKTEYR 335