Pairwise Alignments

Query, 392 a.a., transposase from Pseudomonas putida KT2440

Subject, 344 a.a., transposase, IS110 family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  167 bits (423), Expect = 4e-46
 Identities = 110/336 (32%), Positives = 180/336 (53%), Gaps = 11/336 (3%)

Query: 47  ICVDLAKQVFQLAGEDATGRVIYEDRIKSRQAFHDFLLRLPTTVAVLMECGPGAQAWARL 106
           I +DLAK VFQ+A  +    + +  +I +R A  D L +   T+ V+  C   A  W R 
Sbjct: 6   ISIDLAKTVFQVAAFNPDNTIAFNRKI-NRPALLDMLRQCEPTLVVMEACY-SANYWGRT 63

Query: 107 LQAKGNPVRILPAQRVAEHRSGAKNDRNDCYAILRAGRDTSIASIPIKSTTALAIQALHR 166
           ++  G+ V+++PA+ V     G KND ND  AI        ++ +  K+     IQ+L R
Sbjct: 64  IEKLGHTVKLIPARMVKAMLVGNKNDANDAVAIGETAGRPKVSLLRPKTVEQQDIQSLLR 123

Query: 167 IRRGNIKRHTALGNQIRGLLLEHGVSMPQGDAAINKHVPRALEDASLPLPDLLRELLDEL 226
           IR   ++  TA  NQ+RG L E+G+ + +    +   +P  LEDA   L  + R  +  L
Sbjct: 124 IRERLVENRTANCNQLRGFLAEYGLIVAKTRRQLMLAIPLILEDADNELSTVARGFIQRL 183

Query: 227 LMDWLSLGERITALSRRLEATAQEDKVAQRLITIRGVGPIIATAIVAKQTDPSRFASGRM 286
               L L E+I  +++ + A AQ       L+TI GVGPI+A+ ++A   + + F +GR 
Sbjct: 184 YEFQLYLNEQIDQVAQDILALAQAMPQYPLLLTIPGVGPIVASTLLASINEVNDFKNGRQ 243

Query: 287 YSAFFGIVPDQHSSGNKIRLGKMSKRGDGYIRSLMIQGAHSVLSQLRPDSDQPDDRRLLR 346
            +A+ G+ P Q+SSG   RLGK++KRG+  +R L+I GA +V++      D+ DD  L  
Sbjct: 244 LAAWLGLTPSQYSSGTTNRLGKITKRGNQTLRRLLIHGARTVVNW----CDKKDD-SLSL 298

Query: 347 WLSRLGRKE----AAIRLANRNLRIIWALLQSDQVY 378
           WL RL +++      + LAN+  R+++ ++   Q +
Sbjct: 299 WLQRLKQRQHVCKVTVALANKMARMVFVVMSRGQAF 334