Pairwise Alignments

Query, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  287 bits (734), Expect = 1e-81
 Identities = 205/616 (33%), Positives = 316/616 (51%), Gaps = 70/616 (11%)

Query: 41  SWRRSLGHGLDCLQGEQVGLGLE-QGHDLRL----LLERNRLL---IDAVT----PELDY 88
           SW+RS          EQ GL  + +  D+RL    L ER + L   ID V+    P    
Sbjct: 16  SWQRS----------EQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQ 65

Query: 89  LVARQGKAGIVILGDAQANVLAIEGQKHVLQREGLRDLHPGSCWSESLRGTNAIGTAVVE 148
           L A       +IL D    ++   GQ    ++     L  G+CW E ++GTNAIGTA++E
Sbjct: 66  LFAHSDSR--LILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIE 123

Query: 149 GRPTLINCGEHYLDRLSPFSCTSVPLRDPRGEVIGVLDITREGVMAQPQDSLSTLMLAAG 208
            +P  +   +H++      SC++ P+ D  G++IGVLDIT E    Q + +LST ++   
Sbjct: 124 QKPISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSE----QQKHTLSTQVVVQN 179

Query: 209 NI---ESRLFGLCHPDQLVLAFHSRPQYLNSAWHGLLALSLDGEVLAANDGACQLLQVPR 265
            +   E++L        + +     P  L+S W G++     G++LA N  A QLL   R
Sbjct: 180 MVQLVENQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGR 239

Query: 266 HELIGRRSTDLLGERSPAFIARLWQGGVSSVQTAKGEFYFRALQLPRHGRVTPSTPSSKP 325
                     ++G+     + R         QT     Y       +  R    TP+S  
Sbjct: 240 ----------VIGQSVEQVLPR--------PQTHASFIYTTTPLHSKQHRTRALTPASD- 280

Query: 326 ALSKQSPALDALAGGDQRLARNLRMARQGLGNGLPVLLLGETGTGKEVVARALHQASPRA 385
                      L  GD  + R  + A + +   + +L+LG+TG GK    +ALH+ S R 
Sbjct: 281 -----------LHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRK 329

Query: 386 DKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMVGRLMQAHGGTLFLDEIGDMPLA 445
           + P VAVNC A+ + L+E+ELFGY  GAFTG+   G  G++  A  G LFLDEI D+PL 
Sbjct: 330 NGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLD 389

Query: 446 LQARLLRVLQERRVAPLGAGDEQDIDVALICATHRDLKRLVQEQHFREDLFYRVNGVSLR 505
            Q+RLL VLQ++ V P+G+     +D+ +I ATH++L++LV +  FR+DL+YR++ + + 
Sbjct: 390 AQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVE 449

Query: 506 LPALRERDDLAAIIQGLLDKADARGVTLDPALTALLEGFDWPGNIRQLEMVVRTALAMRE 565
           LP+ ++R D  A+I  +  +    G  +   L   L  + WPGN+R+L+ +++ A  M E
Sbjct: 450 LPSFQQRQDRQALIHHIHRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAE 509

Query: 566 DGEQVLTLDHLTDCLLDELASSAAPSGSLKDSELE---QIRGALAR----HQGNVSAAAA 618
            GE VLT +HL   L  +L S AAP+ +  D + +    +  +L +     QGN+S  + 
Sbjct: 510 -GEGVLTFNHLPTHLAQKL-SHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSR 567

Query: 619 ALGISRATLYRKLKQL 634
            LG+SR T+YRKLK L
Sbjct: 568 LLGLSRNTIYRKLKAL 583