Pairwise Alignments

Query, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

 Score =  324 bits (830), Expect = 8e-93
 Identities = 226/625 (36%), Positives = 322/625 (51%), Gaps = 36/625 (5%)

Query: 35  RDEIDASWRRSLGHGLDCLQGEQVGLGLEQGHDLRLLLERNRLLIDAVTPELDYLV-ARQ 93
           R  I  SW R +  GLD    E   L  E      +  + + LL       L Y      
Sbjct: 10  RSVIADSWNRCIAWGLDH-DHEPAPLKPEPARLEEINRQHSELLSVTEAEVLPYYRNVLS 68

Query: 94  GKAGIVILGDAQANVLAIEGQKHVLQREGLRDLHPGSCWSESLRGTNAIGTAVVEGRPTL 153
               +++L D  A VL+  G + + +         G+ W E   GTNAIGT++  G P  
Sbjct: 69  NSRCLILLADQHATVLSSWGDERITETRLKPWFQTGANWQEQNCGTNAIGTSIAVGGPVQ 128

Query: 154 INCGEHYLDRLSPFSCTSVPLRDPRGEVIGVLDITREGVMAQPQDSLSTLMLAAGNIESR 213
           I   EH+L        ++ P+ D   ++ GVL +  +  + Q   +L  + L + ++E+R
Sbjct: 129 IQRNEHFLKTNRSIIGSAAPIFDAHRQIAGVLSVFSDAYLPQAH-TLGMVRLLSQSVENR 187

Query: 214 L----FGLCHPDQLVLAFHSRPQYLNSAWHGLLALSLDGEVLAANDGACQLL-----QVP 264
           L    FG   PD   +  ++     +S W G+L     G+V+A+N  A QLL     +  
Sbjct: 188 LINRQFG---PDHFQITLNTTADNFDSPWSGILVCDDSGQVIASNQRADQLLGMNTVEAR 244

Query: 265 RHELIGRRSTDLLGERSPAFIARLWQGGVSSVQTAKGEFYFRALQLP-RHGRVTPSTPSS 323
             EL  R    +LG      +    +  V      K     R  ++P  +G+  PS    
Sbjct: 245 LDELFTRHRNHILGHPETETLQLTTRSKVRLSARIK-----RPTRIPDANGKTKPSPVPE 299

Query: 324 KPALSKQSPALDALAGGDQRLARNLRMARQGLGNGLPVLLLGETGTGKEVVARALHQASP 383
               S +   +D L  GD  + R    + + L  GLPVL+ GETG GKEV+ +ALH+AS 
Sbjct: 300 DLRQSARPLDIDNLDYGDSAVKRCATQSLKVLERGLPVLITGETGVGKEVLVKALHRASH 359

Query: 384 RADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMVGRLMQAHGGTLFLDEIGDMP 443
           R D+P VAVNCAAIP  L+ESELFGY  GAFTG+R  G +G + +AH G LFLDEIG+MP
Sbjct: 360 RKDQPLVAVNCAAIPPELVESELFGYEAGAFTGARAQGSLGFIRKAHKGVLFLDEIGEMP 419

Query: 444 LALQARLLRVLQERRVAPLGAGDEQDIDVALICATHRDLKRLVQEQHFREDLFYRVNGVS 503
           L+ Q+RLLRVLQER V P+G+ D   +D+ L+ AT+R L   ++  HFR DL+YR+NG+ 
Sbjct: 420 LSAQSRLLRVLQERVVTPVGSTDSVPVDILLVTATNRPLTTRIENGHFRADLYYRINGLC 479

Query: 504 LRLPALRERDDLAAIIQGLLDKADARGVT--LDPALTALLEGFDWPGNIRQLEMVVRTAL 561
           + LPALR R D   +IQ L  +    G +  L P + + LE   WPGNIRQL  V+R A+
Sbjct: 480 VELPALRNRADRRMLIQSLYARHRDPGQSEQLSPKVLSALEAHPWPGNIRQLVNVLRVAI 539

Query: 562 AMREDGEQV----LTLDHLTDCLLDELASSAAP------SGSLKDSE--LEQIRGALARH 609
           A+  DGEQV    L  D L +   + L  S  P      +GS  ++E  L +      + 
Sbjct: 540 AI-ADGEQVQVWHLPEDFLAEFEANPLEQSDPPMQEQPVAGSEAETEDTLARTLQIYRKC 598

Query: 610 QGNVSAAAAALGISRATLYRKLKQL 634
            GN+S AA  L ISR TLY++L+++
Sbjct: 599 TGNISQAARELSISRNTLYKRLREM 623