Pairwise Alignments

Query, 569 a.a., putative ABC efflux transporter, permease/ATP-binding protein from Pseudomonas putida KT2440

Subject, 595 a.a., ABC transporter, ATP-binding/permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  280 bits (715), Expect = 2e-79
 Identities = 186/561 (33%), Positives = 305/561 (54%), Gaps = 19/561 (3%)

Query: 7   VLMRQALAWLYGFVRPHR-RAIGLLLSLSLGA-SLLALAQPWLVKTLIDEGLLAKDYQTL 64
           V  R  L W++ F++P+R R +  ++ L +G+ + L+L Q   V+ ++DEG +  + Q L
Sbjct: 10  VSQRAVLPWIWQFLKPYRPRVVAAIVFLLIGSLAWLSLGQG--VRLMVDEGFIKDNAQRL 67

Query: 65  WHMAAIMIGAGLLGTVLAGVNRYLHTRLSGRILFALRDDLYRHLQQLSPTFYGRRRIGDI 124
             +   ++    +         YL T L  R+   +R  +Y  L +LSP FY + R G++
Sbjct: 68  NEIILFVLVITAVSGTAVFCRFYLMTWLGERVSADIRLAVYNQLLKLSPAFYAKVRTGEV 127

Query: 125 LSRLDGDVAEIQRFAVDSLFSAVSAVIGLVGAVTLMLMLSWQLSLLLALLVPIEVLWLRW 184
           +SR   D   +Q     SL  A+ + + ++G + +M + S +++LL+ L VP+ +  + +
Sbjct: 128 ISRFTADSTLLQTVVGSSLSMALRSGVTVIGGLAMMGITSVKMTLLVLLAVPLVLGPVSF 187

Query: 185 MRRKVEREVRNLRERSADVSSFLVETLPAMKFIQAAGQQGREA----GRLDQL---GQGY 237
             RKV    R  ++R AD+ +++ ETL  +  +QA G + ++     GR++ +     G 
Sbjct: 188 FGRKVRTLARESQDRVADLGAYVDETLHEIHTVQAYGHEDKDRSLFNGRVEDVMTAASGR 247

Query: 238 MRQLLKVQVTEFFTQAIPGTLTSWCRACAFLVGGWWVIQGTWQLGALIAFSTYMGMAVGP 297
           +R    +  +  F       L +W       VG   V+ G    G L AF  Y  M  G 
Sbjct: 248 IRYRALLISSVMFLSIAAIALVTW-------VGAHDVMSGKMTGGELSAFMFYAVMVAGA 300

Query: 298 VQSLLGLYVAVQRMAVSLGRVMELKQEAVAVHQTANPQPIPDGP-GELRLEALSFAHEGR 356
           V ++  +   +QR + +  R++EL +  V +     P+ +P    GEL+L  L+F +  +
Sbjct: 301 VATISEVVGEIQRASGAAERLIELAETEVDIPAPLVPKTLPTKVRGELQLHQLNFHYPEQ 360

Query: 357 QGAVLNNVQVSIPGGLKVAISGASGVGKSTLIDLLQRFYDPDAGRILLDGVDLRDLDLAA 416
              VL+++ + I  G +VA+ G SG GKSTL  LLQRFY P +G ILLDG+D+  L    
Sbjct: 361 TQLVLSDLNLVINAGERVALVGPSGAGKSTLFQLLQRFYVPSSGSILLDGIDIAALSPQD 420

Query: 417 LRRRIAVVSQDIVLFRGTLAQNLAYGVPEASRDELERVVRLARLDSLVDSLPLGLDGLLG 476
           LR + A+V QD V+F  ++ +N+ YG  +AS  E+      AR    +     G    LG
Sbjct: 421 LRAQFALVPQDSVIFATSVLENVRYGRVDASEQEVIDACIAARAHEFISEFSEGYQTYLG 480

Query: 477 ERGQQLSGGQKQRIAIARAVLQAPAILVLDEATSAVDEATEREVIAAIDQLFAGRTRILI 536
           ERG +LSGGQKQRIAIARA+L    IL+LDEATSA+D  +E++V  A+D+L AG+T ++I
Sbjct: 481 ERGVRLSGGQKQRIAIARAILADRPILLLDEATSALDALSEQKVKQALDELMAGKTTLII 540

Query: 537 SHRASTLADADLQLQLHDGQL 557
           +HR +T+ +AD  +    G++
Sbjct: 541 AHRLATVINADRIIVFDKGRI 561