Pairwise Alignments

Query, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 426 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  295 bits (756), Expect = 1e-84
 Identities = 177/395 (44%), Positives = 241/395 (61%), Gaps = 11/395 (2%)

Query: 2   PTTLSPCLRPLALMALLSLSLAGCSDSAEPDEQA----PTAQVRVETLQLQPLAISSELS 57
           P  LS     L   A LS  L  C DS E  + A    P  +V V T   Q L I+  L 
Sbjct: 27  PMMLSKTFLRLMTTAALSAVLWSC-DSQEGGQAAGGARPAPEVTVITAAPQTLRITERLP 85

Query: 58  GRILAPRTAEVRARVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEA 117
           GR +A R+AEVR +V G++LKR++ EG++V +G  L+ IDPA +KA  DSA+A LAKA+A
Sbjct: 86  GRTVAYRSAEVRPQVNGIILKRLFEEGTEVTEGQQLYQIDPATYKAALDSAKAQLAKADA 145

Query: 118 TRYQARLQEQRYRELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVT 177
           T   AR +  RY ELV  KAVSRQ+YD+  A+  ++ A VA+A+A ++ A +NL Y  VT
Sbjct: 146 TVKSARAKAARYGELVKLKAVSRQDYDDVTATLAESVASVADAQATVDAAEINLAYTRVT 205

Query: 178 APISGRIGRAQVTEGALVGQNETTPLATIQQLDPIHADVTQSTRELNALRRALRAGELQQ 237
           APISGRIGR+ VTEGALV  N+ T LATI QLDPI+ D+TQS+ +L  LR  +  G +Q 
Sbjct: 206 APISGRIGRSAVTEGALVTANQATTLATITQLDPINVDLTQSSDKLLKLRAQMANGTVQ- 264

Query: 238 VGDGQARATL-IQDDGSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRV 296
               +   TL I + G+ Y L G L FS++ VD +T  + LR+ FPNP+  LLPG +VR 
Sbjct: 265 -APERVPVTLQIDNSGTPYGLTGTLQFSEVVVDETTGTVRLRATFPNPNRILLPGLFVRA 323

Query: 297 RLEQAVQPKGLSVPQRAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAA 356
            ++   +     +PQRA++RD++G   + V+    +   R V   + QG  W+V+EGL  
Sbjct: 324 TVDFGSRENVFLIPQRAVVRDASGKAALWVIGDGDKAERRPVTAETTQGTNWVVTEGLKG 383

Query: 357 GERVVVEGLQHVKAGDQVQVDNTPAAPPIAQHTGQ 391
           GER+V+ GLQ +  G QV+     AAPP  Q  GQ
Sbjct: 384 GERIVIAGLQSMAPGAQVK---AVAAPPAGQEAGQ 415