Pairwise Alignments

Query, 705 a.a., Sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1639 a.a., chemotaxis protein CheY from Burkholderia phytofirmans PsJN

 Score =  300 bits (767), Expect = 5e-85
 Identities = 186/525 (35%), Positives = 285/525 (54%), Gaps = 12/525 (2%)

Query: 179  IETTASVEAHRHWREQVQSFERQVAQHVAEREQFWLLSREAMMMLTPELKLHGANPAWYR 238
            IE     +A    R+  ++ ER+V + VA+R++ W LS + +++   E +L   +P+W  
Sbjct: 959  IEIAERTKAQSALRDLNETLERRVIETVADRDRLWELSEDLLVVADIEGRLQRVSPSWST 1018

Query: 239  ILGWTQEQVQAMSVMELVHPTERTEVRLAVSGLFQCSHAEQLEIRLRHRDGHYHWFRWSA 298
             LG     + + S ++LVHP +   VR  ++ L +     + E R +  DG + W  W+ 
Sbjct: 1019 ALGHNVHWLMSRSYVDLVHPDDVETVRTHLAELRRTGVPVRYENRFKRIDGTWRWVAWTL 1078

Query: 299  RFDGSL--LTAVGRDITADRE--EAARQAEALMHNSERMEVVGQLAGGMGHEMNNLLSGI 354
              D     +  VGRD+TAD+E  EA R AE  +  +++ME +G+L GG+ H+ NNLL  I
Sbjct: 1079 ALDPDTTRIHGVGRDVTADKETTEALRHAEEALRMAQKMEAIGKLTGGVAHDFNNLLQVI 1138

Query: 355  GGSLELLQRRLQEGRLERVEAYVDVARDSVQRAMDLTHRLIAFSRHQPLAPRPLDFNRQL 414
            GG+L+LL + +     E+ E  V  A   V R  +L  +L+AF R QPLAP+ ++  R +
Sbjct: 1139 GGNLQLLAKDVAGS--EKPEQRVRNALAGVARGANLASQLLAFGRRQPLAPKVVNLGRFV 1196

Query: 415  RLSEPLLLRALGAEMRLHWQLDVAPWAVSLDVPQLENALIHLCANAREACLEQGNVTISS 474
            R  + +L RALG  + +   +    W   +D  Q+ENAL++L  NAR+A    G +TI +
Sbjct: 1197 RGLDDMLRRALGDGVEIETIVSGGLWNTLVDPFQVENALLNLAINARDAMSGHGKLTIEA 1256

Query: 475  VNERLT-AFFPDEGGLPPGDYVALHVEDDGHGMAAADIARAFEPFYTTKPLGRGAGLGLS 533
             N  L  A+      + PG YV L V D G GM+     R FEPF+TTK  G+G GLGLS
Sbjct: 1257 GNAALDDAYAKRNAEVTPGQYVMLAVTDTGAGMSPEVRERVFEPFFTTKAEGQGTGLGLS 1316

Query: 534  MVYGFVRQSGGYAWIESTPEQGTRVSMLFPRSHEPVPDEPAPVPLSQRMARG--ERLLLV 591
            MVYGFV+QSGG+  I S    GT + +  PR  +   +E     +    A+G  E +L V
Sbjct: 1317 MVYGFVKQSGGHVKIYSEEGHGTTIRIYLPRVRQ---EEDLETNIEAGPAKGGTETILAV 1373

Query: 592  DDELDLRAVMREYLTERGFDVTDVGDANSALERFRHGGPFDLVITDIGLPGGFSGRQVAK 651
            +D+ ++R  + E L++ G+ V    DA SAL     G P D++ TD+ +PG     ++A+
Sbjct: 1374 EDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDMLFTDVVMPGPLRSTELAR 1433

Query: 652  AMRMQLAQQKILFITGYADQSIEAQLLDQPGTALLNKPFSLAHLA 696
              R +L    +LF +GY D +I        G  LL+KP++   LA
Sbjct: 1434 KARERLPAIAVLFTSGYTDNAIVHSGRLDEGIELLSKPYTHEALA 1478



 Score =  124 bits (311), Expect = 4e-32
 Identities = 181/767 (23%), Positives = 284/767 (37%), Gaps = 152/767 (19%)

Query: 45  MGERIAQFDWWRTSLGPLSRWPASLRIAVDMMHLSPFPCAVVWGADLCVVHNNGYRALRA 104
           +G  I  +DW +T+LG    WP  L+IA+ +M  S  P  + WG +L   +N+ Y+++  
Sbjct: 30  LGALIRAYDWTQTALGAPDTWPQGLKIAIRIMLTSRQPLWIGWGDELLYFYNDPYKSIIG 89

Query: 105 --LPDALGMAFDTLWSDIWPAVGPWVFKALEGHSN-FVEDPPLRIVRSEGAEPLWCAFGY 161
              P ALG     +W +IW  + P +  AL G    FVE   L + R+   E  +  F Y
Sbjct: 90  GKHPVALGQPTRVVWREIWTDIEPLLDTALAGAEGIFVEQKLLIMERNGFPEETYYTFSY 149

Query: 162 APLHDELGNVAGFLHTVIETTASVEAH----------------RHWREQVQSFERQVAQH 205
           +P+  E G   G +    + TA V                   R WRE  +   R +  +
Sbjct: 150 SPIPGEDGEPGGIICANSDNTAQVVGERQLALLKELAAVSPNGRDWREACELSARALQAN 209

Query: 206 VAEREQFWLLSREA---MMMLTPELKLHGANPAWYRILG-----WTQEQVQAMSVMELVH 257
             +     L + E     + L     +   +PA  + +      W    V  +   ++V 
Sbjct: 210 PQDLPFALLYAAEPGSDTVTLVGACGIEPGHPAAPQTMRVGESLWPIADVVKIQAPQMVR 269

Query: 258 P-----------------------------TERTEVRLAVSGLFQCSHAEQLEIRLRHRD 288
                                         +E T+  L ++GL  C   +         D
Sbjct: 270 DLTQRFGTALPRGPWHLAPEQAVILPVSAGSESTQTVLLIAGLNPCRLVD---------D 320

Query: 289 GHYHWFRWSARFDGSLLTAVGRDITADREEAARQAEALMHNSERMEVVGQLAGGMGHEMN 348
            +  +    A   G +  A+G       EE  R+AEAL   +E           + HE  
Sbjct: 321 AYRSFLNLVA---GQIGAAIG--YAQAYEEERRRAEAL---AEIDRAKTTFFSNISHEFR 372

Query: 349 NLLSGIGGSLELLQRRLQEGRLERV---------EAYVDVARDSVQRAMDLTHRLIAFSR 399
             L+ + G LE L  R Q G               A +++   +  R + L + L+ FSR
Sbjct: 373 TPLTLMLGPLEELLARPQPGPSGNNAQTRSDIDDRALIEITHRNGLRLLKLVNALLDFSR 432

Query: 400 HQP----LAPRPLD---FNRQLRLSEPLLLRALGAEMRLHWQLDVAPWAVSLDVPQLENA 452
            +     +  +P D   F  +L       + A G  +RL  ++   P  V LD    E  
Sbjct: 433 IEAGRIEIHTQPTDIAAFTAELASLFQSAMEAAG--LRLEVEIPATPVVVQLDREMWEKV 490

Query: 453 LIHLCANAREACLEQGNVTISSVNERLTAFFPDEGGLPPGDYVALHVEDDGHGMAAADIA 512
           +++L +NA +     G V +        A     GG      V + V D G G+A  ++ 
Sbjct: 491 VMNLLSNAYKFTFF-GTVRV--------AVRAVTGG------VEVSVTDSGIGVAEEEVP 535

Query: 513 RAFEPFYTTKPL-GR---GAGLGLSMVYGFVRQSGGYAWIESTPEQGTRVSMLFPRSHEP 568
           R FE F+      GR   G+G+GL+MV   V+  GG   ++S   +G   ++  P     
Sbjct: 536 RLFERFHRVAGAPGRSVEGSGIGLAMVQELVKLHGGTVRVDSVLGEGACFTVSLPSGAVQ 595

Query: 569 VPDEPAPVPLSQRM--------------------------------------ARGERLLL 590
              E A V  +                                         A   RLL+
Sbjct: 596 SEREDAGVHATMSKHARSYVDAALRWSPENEIVDGASIETASADETSPEAAPAAAARLLV 655

Query: 591 VDDELDLRAVMREYLTERGFDVTDVGDANSALERFRHGGPFDLVITDIGLPGGFSGRQVA 650
           VDD  DLR  M   L   G DV    D  +ALE  R   P DLV++D+ +P    G  + 
Sbjct: 656 VDDNADLREYMSRILRAAGHDVRLASDGQAALEAARAEAP-DLVLSDVMMP-RLDGFGLL 713

Query: 651 KAMRM--QLAQQKILFITGYADQSIEAQLLDQPGTALLNKPFSLAHL 695
           +A+R    L    +L ++  A +      ++      L KPFS   L
Sbjct: 714 RALRADPHLRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSAREL 760



 Score = 42.4 bits (98), Expect = 2e-07
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 587  RLLLVDDELDLRAVMREYLTERGFDVTDVGDANSALERFRHGGPFDLVITDIGLPGGFSG 646
            R+LLV+D+  +R    E L    FD+ +    + A +         +++TD+GL G  SG
Sbjct: 1524 RILLVEDDELIRVSTAELLRTFDFDILEAEGEHDAKQILSEHA-ISVMLTDVGLAGK-SG 1581

Query: 647  RQVAKAMRMQLAQQKILFITGYADQSIEAQLLDQPGTALLNKPFSLAHLAD 697
              +A  +  +    +++F+TGY      AQ    P   L+ KP+    L D
Sbjct: 1582 VDLALDVCRERPDLRVIFLTGYDLVLTPAQRAVLPHAMLMRKPYDPLDLID 1632