Pairwise Alignments

Query, 351 a.a., conserved protein of unknown function containing tetratricopeptide repeat domain from Pseudomonas putida KT2440

Subject, 933 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 53.9 bits (128), Expect = 2e-11
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 1/161 (0%)

Query: 189 NDYTHAAAALQRALAVAPGNLDALATQVRLLERQGHHDASRQVLGKALALSPDSAFLQYE 248
           ND       L++AL   P N++A +    LL       A+  V   AL +SPD+  +   
Sbjct: 559 NDLVAVEKWLRQALERDPANMEAASNLASLLTSTSRPQAAIIVAQDALRISPDTPAVMEA 618

Query: 249 LGLWLKRHEQREYALLALSRAVELDPDNADYRYTLAVTLHELDQLDAAQKQLETVLNRQP 308
           LG           A   L RAV + P    Y Y LA     L+     ++ LE+V+  QP
Sbjct: 619 LGKAQLLIGDYTAAADVLRRAVAIKPSGLTY-YLLATAYLNLNDPPRLKEALESVVKLQP 677

Query: 309 ANRRARVLLIQYWKESGQLQNVQVSLAELERQNPDDPALQQ 349
            +  +RV+L     + G L + + ++  +    P DP  Q+
Sbjct: 678 DHVDSRVMLATMIVDGGSLSDAKTAVEGVTTDFPGDPRAQE 718



 Score = 41.6 bits (96), Expect = 9e-08
 Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 194 AAAALQRALAVAPGNLDALATQVRLLERQGHHDASRQVLGKALALSPDSA-FLQYELGLW 252
           A  AL +AL + P + DAL    ++    GH DA+R +L +A A +PD    L  +    
Sbjct: 155 ARLALDKALDIDPADKDALIGAAQIETMAGHQDAARALLARAAAAAPDDVDVLVAQADTA 214

Query: 253 LKRHEQREYALLALSRAVELDPDNADYRYTLAVTLHELDQLDAAQKQLETVLNRQPAN 310
           L  ++      L    A  L P N   R +LA    E  +   A++ L TVL   PA+
Sbjct: 215 LSANDPAAAEGLFSQAAARL-PLNPLIRLSLAQAQIEAGKNAEARQTLNTVLADIPAH 271



 Score = 38.5 bits (88), Expect = 7e-07
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 3/188 (1%)

Query: 162 EQYQQALEQQPEDADAQVHLARLYLHENDYTHAAAALQRALAVAPGNLDALATQVRLLER 221
           E  +  ++ QP+  D++V LA + +     + A  A++      PG+  A   + R L +
Sbjct: 667 EALESVVKLQPDHVDSRVMLATMIVDGGSLSDAKTAVEGVTTDFPGDPRAQEVRARYLAK 726

Query: 222 QGHHDASRQVLGKALALSPDSAFLQYELGLWLKRHEQREYALLA--LSRAVELDPDNADY 279
                AS     +A    P++      + L    +E+ + A  +  L   V  +PD+   
Sbjct: 727 -AEGPASAITFLEASLTDPNTRPRNLVMLLASAYNEKGDGAKASSLLEDWVAKNPDDYPG 785

Query: 280 RYTLAVTLHELDQLDAAQKQLETVLNRQPANRRARVLLIQYWKESGQLQNVQVSLAELER 339
           R +LA      +QL+ A+  LE  L R P +  AR  L +     GQ       +    R
Sbjct: 786 RLSLATQQIAANQLEKAKTTLEKGLERVPNDWIARNNLAEVMLRLGQTSAAYDQIVIARR 845

Query: 340 QNPDDPAL 347
                PAL
Sbjct: 846 SGGPQPAL 853



 Score = 37.7 bits (86), Expect = 1e-06
 Identities = 48/222 (21%), Positives = 75/222 (33%), Gaps = 34/222 (15%)

Query: 164 YQQALEQQPEDADAQVHLARLYLHENDYTHAAAALQRALAVAPGNLDALATQVRLLERQG 223
           YQ+A+  +P+D     +L  + L   D T     L RA  +   +  AL      L ++ 
Sbjct: 398 YQKAVVLRPDDPALLTNLGIVKLARGDTTAGEDTLNRAAELEGDDKKALLLLFSSLLQKK 457

Query: 224 HHDASRQVLGKALALSPDSAFLQYELGLWLKRHEQREYALLALSRAVELDPDNADYRYTL 283
             D +  + G      PD A+     G+          A  A   AV  +P   D    L
Sbjct: 458 DFDKAEALAGDTKRKYPDRAWGWTMDGMIQASRGDTAMARAAFETAVRKEPTAGDAVRNL 517

Query: 284 AVTL----------------------------------HELDQLDAAQKQLETVLNRQPA 309
           A+T                                   ++ + L A +K L   L R PA
Sbjct: 518 ALTALQSGDTEGARGVVEGYLRTNAGDSAMAMIAAAVANKRNDLVAVEKWLRQALERDPA 577

Query: 310 NRRARVLLIQYWKESGQLQNVQVSLAELERQNPDDPALQQGL 351
           N  A   L      + + Q   +   +  R +PD PA+ + L
Sbjct: 578 NMEAASNLASLLTSTSRPQAAIIVAQDALRISPDTPAVMEAL 619



 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 40/172 (23%), Positives = 59/172 (34%), Gaps = 9/172 (5%)

Query: 138 AVDALLGLDPDAIGLYFGPLQ---------SALEQYQQALEQQPEDADAQVHLARLYLHE 188
           A+D  L +DP       G  Q         +A     +A    P+D D  V  A   L  
Sbjct: 158 ALDKALDIDPADKDALIGAAQIETMAGHQDAARALLARAAAAAPDDVDVLVAQADTALSA 217

Query: 189 NDYTHAAAALQRALAVAPGNLDALATQVRLLERQGHHDASRQVLGKALALSPDSAFLQYE 248
           ND   A     +A A  P N     +  +     G +  +RQ L   LA  P   +  Y 
Sbjct: 218 NDPAAAEGLFSQAAARLPLNPLIRLSLAQAQIEAGKNAEARQTLNTVLADIPAHPWALYL 277

Query: 249 LGLWLKRHEQREYALLALSRAVELDPDNADYRYTLAVTLHELDQLDAAQKQL 300
            GL   R      A   L+ A+ L        +   V  + + + + A + L
Sbjct: 278 RGLTAYRTNDMTAADKDLTAALALAKTLRPAIFLAGVVKYNIGEYEQASRLL 329



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 23/199 (11%)

Query: 155 GPLQSALEQYQQALEQQPEDADAQVHLARLYLHENDYTHAAAALQRAL-AVAPGNLDALA 213
           G  ++AL     AL+  P++ DA++ +  + L   D       L+      AP       
Sbjct: 49  GDQKAALIHVSNALKAAPDNRDAKILMGEITLSGGDVWSGEKLLKEVRDGGAPAETWLRP 108

Query: 214 TQVRLLERQGHHDASRQVLGKALALSPDSAFLQYELGLWLKRHEQREYALLALSRAVELD 273
               L+ +Q   +A    L +++  +     ++   GL L    Q   A LAL +A+++D
Sbjct: 109 LAKSLILQQKFDEAL--TLARSIPETELVGAVKTIEGLALFGKGQDGAARLALDKALDID 166

Query: 274 PDNADYRYTLAVTLHELDQLDAAQKQLETVLNRQPANRRARVLLIQYWKESGQLQNVQVS 333
           P + D     A              Q+ET+   Q A   AR LL +    +    +V V 
Sbjct: 167 PADKDALIGAA--------------QIETMAGHQDA---ARALLAR--AAAAAPDDVDVL 207

Query: 334 LAELERQ-NPDDPALQQGL 351
           +A+ +   + +DPA  +GL
Sbjct: 208 VAQADTALSANDPAAAEGL 226