Pairwise Alignments
Query, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440
Subject, 1053 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N1B4
Score = 780 bits (2014), Expect = 0.0
Identities = 437/1055 (41%), Positives = 635/1055 (60%), Gaps = 28/1055 (2%)
Query: 4 SKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETV 63
SKFFI RPIFA V++LV+++ G++S+ +LPI++YP + PP + + +PGA+ + + +TV
Sbjct: 2 SKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDTV 61
Query: 64 AAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKLPEE 123
+EQ + G++N+ Y+SS+S +DG +T+T TF GT+ D AQVQVQN++ P LP+E
Sbjct: 62 VQVIEQQLNGIDNLRYVSSESNSDGNMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQE 121
Query: 124 VTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMG 183
V + GI V K+ + MV+ + S D LSNY + N++D ++R GVGD Q+FG
Sbjct: 122 VQQQGIRVTKSVKNFLMVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVGDFQVFG-A 180
Query: 184 DYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRL 243
Y++R+WLDP K + NLT DV AI QN QV++GQLG PA +I + RL
Sbjct: 181 QYAMRIWLDPAKLNNYNLTPVDVKTAIAAQNVQVSSGQLGGLPALPGQQLNATIIGKTRL 240
Query: 244 VNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGSNAI 303
E+F+ I+++ DG R+ D+A V LG Y++ + N PA + + G+NA+
Sbjct: 241 QTAEQFKAILLKVNKDGSQVRVGDVAEVGLGGENYSISAQFNGAPASGLAVKLANGANAL 300
Query: 304 EISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILFLQ 363
+ + +R + LK FPEGM+ YD T V SI+ VV TL EA+VLV LV+ LFLQ
Sbjct: 301 DTAKALRNTIDTLKPFFPEGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQ 360
Query: 364 TWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNI 423
+RA++I + VPV L+GTF ++ FGFS+N L++FG+VLAIG++VDDAIVVVENVER +
Sbjct: 361 NFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
Query: 424 G-LGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVI 482
GL P EAT+K+M ++ G ++ ALVL AV +P AF SG TG YKQF++TI + +
Sbjct: 421 SEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMAL 480
Query: 483 SAFNSLTLSPALAAVLLK-----DHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYV 537
S +L +PAL A +LK +H PK F F FNR FDR SY
Sbjct: 481 SVLVALIFTPALCATMLKAIPKGEHGTPKRGF------------FGWFNRSFDRGVKSYE 528
Query: 538 GGVRRVIRSSGIALFVYAGL-MGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRT 596
GV ++ L Y + +G+ +L F+ PT F+P +D+ L A Q P +S RT
Sbjct: 529 RGVGNILTHKAPYLLAYLIIVVGMIWL-FTRIPTAFLPEEDQGVLFAQVQTPAGSSSQRT 587
Query: 597 EAVIKRMSEIALK---QPGVADSVA--FPGLSINGFTNSPNSGIVFTPLKPFDERKDPSQ 651
+ V+ M E L+ + G D+VA F N +SG+ F LKP++ER +
Sbjct: 588 QVVVDEMREFLLRPSSEGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPWEER-NADN 646
Query: 652 SAAAIAAALNAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNI 711
S +AA F +DA + F PP V LG GF + ++DR +G+E L +
Sbjct: 647 SVFKLAARAQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEKLMEARNQF 706
Query: 712 IAKSHNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFN 771
+ + L+ + + + PQ ID EKA GV +TDI +TL + LGS Y NDF
Sbjct: 707 LGMAAQSKVLSQVRPNGLNDEPQYQLEIDDEKASALGVTLTDINNTLSIALGSSYVNDFI 766
Query: 772 RFGRTYQVNVQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFI 831
GR +V +Q R+ E + + VRN+ G M+P ++F K G ++ YNG
Sbjct: 767 DRGRVKKVYIQGLPGARMSPEDLKKWYVRNSAGTMVPFSSFAKGEWIYGSPKLARYNGVE 826
Query: 832 TAEINGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVL 891
EI GA APG+S+G+A A +E L K +LP G+ WT L+Y++ LSG+ A ++ L +L
Sbjct: 827 AMEILGAPAPGHSTGEAMAEVEALAK-KLPAGVGISWTGLSYEERLSGSQAPALYALSLL 885
Query: 892 LAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNA 951
+ FL LAA YESWS+P+AV+L+VP+ ++ A+ + G N+++ Q+GL+ +GLA KNA
Sbjct: 886 MVFLCLAALYESWSIPIAVMLVVPLGIIGALMATSMRGLSNDVYFQVGLLTTIGLAAKNA 945
Query: 952 ILIVEFAKDEQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAM 1011
ILIVEFAK+ +G A +EACR+RLRPI+MTS+AF++GVVPL S+GAGS +HA+
Sbjct: 946 ILIVEFAKELHEQGRSLRDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAI 1005
Query: 1012 GVAVFSGMIGVTVFGLFLTPVFFFLIRRFVERRQA 1046
G V GMI TV +F P+FF + +R+ A
Sbjct: 1006 GTGVIGGMITATVLAIFWVPLFFVTVSSMGQRKVA 1040