Pairwise Alignments

Query, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440

Subject, 1048 a.a., multidrug-efflux system transmembrane protein from Sinorhizobium meliloti 1021

 Score =  819 bits (2116), Expect = 0.0
 Identities = 446/1046 (42%), Positives = 638/1046 (60%), Gaps = 22/1046 (2%)

Query: 6    FFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAA 65
            FFI RPIFA V+++ ++IAG I++  LP+S+YP+V PP + +  N+PGA+ +   ++V  
Sbjct: 4    FFIDRPIFAWVVAIFIMIAGIIAIPLLPVSQYPDVAPPQISINTNYPGASSQDTYQSVTR 63

Query: 66   PLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKLPEEVT 125
             +E  + GVE +LY  S +++ G +++  TF  GTD   A V +QNRV R +P+LP+ V 
Sbjct: 64   LIEDELNGVEGLLYFESSTSSSGSVSIDATFQPGTDPSQASVDIQNRVQRVEPRLPDPVR 123

Query: 126  RIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMGDY 185
            + G+ VD+A     +++ LTS D   D + L +Y   N+  E+ R+ GVG  QLF   + 
Sbjct: 124  QQGVQVDEAGAGFLLIISLTSTDGSMDAIGLGDYLSRNVLSEIQRVPGVGRAQLFAT-ER 182

Query: 186  SLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRLVN 245
            S+RVWLDP+K    NLTA+DV AAI+ QN Q+A+G +GA P P +      +  +G+L +
Sbjct: 183  SMRVWLDPDKMLGLNLTAADVTAAIQAQNAQIASGSIGAQPNPITQQVTAPVVIKGQLSS 242

Query: 246  EEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGSNAIEI 305
             EEF  I++RA ADG   RL+D+AR+E+G   Y   + LN  P+ AI +   P  NA+  
Sbjct: 243  PEEFGAIVLRANADGSAVRLRDVARLEIGGESYTFSTRLNGSPSAAIAVQLSPSGNAMST 302

Query: 306  SDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILFLQTW 365
            S  ++A+M EL + FPEG++YSI YD + FV  SIE V+HTL EA+ LV LV+ LFLQ  
Sbjct: 303  SAAIKARMDELAEFFPEGLEYSIPYDTSPFVAVSIEKVLHTLVEAVGLVFLVMFLFLQNV 362

Query: 366  RASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIG- 424
            R +IIP + VPV+L+GT AVM   GFS+N L++FG+VLAIGI+VDDAI+VVENVER +  
Sbjct: 363  RYTIIPTIVVPVALLGTCAVMLAMGFSINVLTMFGMVLAIGILVDDAIIVVENVERIMSE 422

Query: 425  LGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISA 484
             GL P +AT+KAM ++TG +I   LVL +VF+P AF  G  G  Y+QF+LT+ +S + SA
Sbjct: 423  EGLTPKDATRKAMKQITGAVIGITLVLASVFIPMAFFPGAVGVIYRQFSLTMVVSILFSA 482

Query: 485  FNSLTLSPALAAVLLKD----HHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYVGGV 540
              +L+L+PAL A  LK     HH  K  F            F  FNR FDR SH Y   V
Sbjct: 483  LLALSLTPALCASFLKQVPKGHHHAKRGF------------FGWFNRGFDRTSHGYTRAV 530

Query: 541  RRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEAVI 600
              ++R +G  + +Y  L+      F   P+ F+P +D+ +++   QLP  A+ +RT  VI
Sbjct: 531  GGIVRRTGRFMVIYLALLAGLGWAFLQLPSSFLPDEDQGFVIVMMQLPSEATANRTTEVI 590

Query: 601  KRMSEIALKQPGVADSVAFPGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAIAAAL 660
            ++   I  ++  V   VA  G S   F +  N+G+ F  LK + ER D   SA +IA   
Sbjct: 591  EQTETIFGQEKAVDTIVAINGFSF--FGSGQNAGLAFVTLKDWSER-DADNSAQSIAGRA 647

Query: 661  NAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAKSHNVPE 720
                + I+DA      PP +QGLGT GGF  +++DR  LG  AL +    ++  +     
Sbjct: 648  TMAMSQIKDAISFALSPPAIQGLGTTGGFSFRLQDRAGLGQAALAEARDQLLDLASQSKV 707

Query: 721  LAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGRTYQVN 780
            L G+      +  QV   IDREKA T GV   DI  T+   LGS Y NDF   GR  +V 
Sbjct: 708  LTGVRFEGMPDAAQVSVNIDREKANTFGVTFADINSTISTNLGSSYVNDFPNAGRMQRVT 767

Query: 781  VQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEINGAAA 840
            VQA++  R+    +  L VRN+ G M+PL+ F  V     P + + YNG+    I+G AA
Sbjct: 768  VQADETKRMQTADLLNLNVRNSNGGMVPLSAFADVEWVKAPTQTVGYNGYPAVRISGEAA 827

Query: 841  PGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAAQ 900
            PGYSSG A A +E+L+  ELP G  +EWT  + Q+I SG+ A L+  L  LL FL LAA 
Sbjct: 828  PGYSSGDAIAEMERLV-AELPAGFGYEWTGQSLQEIQSGSQAPLLIALSCLLVFLCLAAL 886

Query: 901  YESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKD 960
            YESWS+P++VI++VP+ ++ A+  V +    N+++ ++GLI ++GL+ KNAILI+EFAK+
Sbjct: 887  YESWSIPVSVIMVVPLGVIGAVLAVTMRDMPNDVYFKVGLIAIIGLSAKNAILIIEFAKE 946

Query: 961  EQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAVFSGMI 1020
             + +G   + + LEA  LR RPILMTS+AF +GV+PL  ++GA S  + A+G  V  GMI
Sbjct: 947  LREQGKSLIDSTLEAAHLRFRPILMTSLAFTLGVLPLAIATGASSGSQRAIGTGVMGGMI 1006

Query: 1021 GVTVFGLFLTPVFFFLIRRFVERRQA 1046
              TV  +F  PVFF  + +  ER +A
Sbjct: 1007 SATVLAIFFVPVFFVFVMKIFERGRA 1032