Pairwise Alignments

Query, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440

Subject, 1044 a.a., Cation/multidrug efflux pump from Sinorhizobium meliloti 1021

 Score =  893 bits (2308), Expect = 0.0
 Identities = 471/1058 (44%), Positives = 687/1058 (64%), Gaps = 23/1058 (2%)

Query: 1    MNFSKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIG 60
            MN S  FI RP  A V+++V+ IAG+++LFQ+PI+++P++ PP V V A++PGAN  V+ 
Sbjct: 1    MNLSAHFIDRPRLATVIAVVMAIAGALALFQIPIAQFPQITPPEVQVTASYPGANASVLE 60

Query: 61   ETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKL 120
            E+V AP+E  + GVE+MLYMSS ST +G  +LT+TFA+GTD   AQV VQNRV    P+L
Sbjct: 61   ESVGAPIEDQVNGVEDMLYMSSSSTNNGTYSLTVTFAVGTDPALAQVNVQNRVALATPRL 120

Query: 121  PEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLF 180
            P  VT+ G++V   S  + M V + SP+   D +++SNYA  NI+D +AR+ GVG+  +F
Sbjct: 121  PASVTQTGVSVRARSSSMLMGVAIYSPEGTRDEIFISNYAANNIRDAIARVAGVGEAGIF 180

Query: 181  GMGDYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQ 240
            G   YS+R+W++P++  +  LTA+D+ +AI+ QN Q +AGQLG+PPA      QL+I  Q
Sbjct: 181  GPS-YSMRIWMNPDRMQALGLTATDLTSAIQAQNAQASAGQLGSPPATSGQQLQLTIMAQ 239

Query: 241  GRLVNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS 300
            GRL  EE+F NII+R   +G + RL+D+ARVELG+  Y   S  N QP+  + ++Q   +
Sbjct: 240  GRLATEEDFSNIIVRTNTEGALVRLRDVARVELGAQSYDTASTFNGQPSATVVVYQSAEA 299

Query: 301  NAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVIL 360
            NA+ +S  V +++  L + FPE + Y+IV+D T F+  +I+ +  TL     LVV V   
Sbjct: 300  NALAVSRAVLSELDRLSRQFPEDVAYAIVFDTTAFITETIKEIAITLAITFALVVAVTYF 359

Query: 361  FLQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVE 420
            FLQ WRA++IP L +PVSLIG FAV++L  +S N ++LF ++LAI +VVDDAI+VVENV+
Sbjct: 360  FLQDWRATVIPTLTIPVSLIGGFAVLYLLDYSANTITLFAVILAISLVVDDAIIVVENVK 419

Query: 421  RNIGLG-LKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAIS 479
            R +    L   +AT++ MS+VTGPI+AT LVL A+FVP AF++G+TGQ Y+QF++TI I+
Sbjct: 420  RLMAEERLNVHDATRRTMSQVTGPIVATTLVLAALFVPIAFVAGITGQLYRQFSVTILIT 479

Query: 480  TVISAFNSLTLSPALAAVLLKDHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYVGG 539
               S  N+LTLSPAL  ++L+   +P+++          S +F  FNR  D + + YV  
Sbjct: 480  ITFSTINALTLSPALCVLMLR---SPREQ---------RSGIFGTFNRGLDFSRNWYVAM 527

Query: 540  VRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEAV 599
            + R+ R   IA  +   ++G  Y  F + PTGFVP++D+ YL    QLP+AASL+RT+  
Sbjct: 528  LDRMSRRLWIASVILLAILGGVYGLFRALPTGFVPSEDQGYLFINVQLPNAASLERTQQA 587

Query: 600  IKRMSEIALKQPGVADSVAFPGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAIAAA 659
            +  +S I  + PGVA+SV   G S+ G   S N+G+V T LKP+ ER+   +S  AI   
Sbjct: 588  LDTVSRILQRTPGVANSVGIAGNSMVGGGGS-NAGMVITALKPWGERRSAEESIDAIMNR 646

Query: 660  LNAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAKSHNVP 719
            L A F  I  A +  F PP + GLGT GGF L+++ R     + + +  + +I K++  P
Sbjct: 647  LRADFGRIPTASVVPFNPPAIPGLGTTGGFDLRLQARSGQSQQEIAEVMRGLIVKANQTP 706

Query: 720  ELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGRTYQV 779
             LA +F+++  +VPQV   +DR +A+  GV+   IF+ +Q +LGS Y +DFN F R YQV
Sbjct: 707  GLASVFSTFSADVPQVFLNVDRRRAELFGVSTATIFNAMQSHLGSSYVDDFNIFSRVYQV 766

Query: 780  NVQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEINGAA 839
             +Q E QFR   E I +L+VR+  GE++PL + L +S + GP  +  YN F +A ING A
Sbjct: 767  RIQDEPQFRSRIEDIQRLRVRSRNGELVPLQSLLSISTSYGPTAINRYNLFPSASINGQA 826

Query: 840  APGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAA 899
            A G S+GQA A +  L ++ LP G  FEWT L  Q+  +GN   L+  + ++  +L L  
Sbjct: 827  ATGTSTGQALATMASLAEQNLPEGFGFEWTGLALQEEQAGNQTALILLMGLIFTYLFLVG 886

Query: 900  QYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAK 959
            QYESWS+PLAV+L V + +L A+ G++++  D NI+ QIGL++L+GLA KNAILIVEFAK
Sbjct: 887  QYESWSVPLAVMLSVAVAVLGALVGLMLASIDINIYAQIGLVLLIGLAAKNAILIVEFAK 946

Query: 960  DEQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAVFSGM 1019
            + + KG+    A       R RP+LMT++A I+GV+PLV ++GAG+  R A+G+ VF G+
Sbjct: 947  ERRDKGMATPEAAAAGTAQRFRPVLMTAMASILGVIPLVIATGAGAGSRRAIGMTVFGGL 1006

Query: 1020 IGVTVFGLFLTPVFFFLIR--------RFVERRQARKA 1049
            +  TV GL L PVF+ L++        RF   R  RKA
Sbjct: 1007 LVGTVVGLLLIPVFYVLVQTVREQAKERFFRTRAGRKA 1044