Pairwise Alignments

Query, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440

Subject, 1049 a.a., multidrug efflux RND transporter permease subunit from Rhodopseudomonas palustris CGA009

 Score =  817 bits (2110), Expect = 0.0
 Identities = 445/1043 (42%), Positives = 638/1043 (61%), Gaps = 23/1043 (2%)

Query: 7    FITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAP 66
            FI RP  AAV++LV  + G+++L ++P+++ P++VPP V V   +PGA+ +V+  TVA P
Sbjct: 6    FIDRPRLAAVIALVTTLVGALALLRIPVAQLPDIVPPQVRVSTTYPGASAEVLESTVAQP 65

Query: 67   LEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKLPEEVTR 126
            +E  + GV+ M+YM S S  DG  TL ++FALGT+ D   V V NRV     +LP EV  
Sbjct: 66   IEAKVVGVDKMIYMKSSSGNDGSYTLDVSFALGTNPDINTVNVNNRVQNALSQLPSEVRL 125

Query: 127  IGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMGDYS 186
             G+TV K S  +  V++++S   +YD L+L+NY ++N+ DELAR+ GVG+  LFG   YS
Sbjct: 126  QGVTVQKRSSSMLQVINMSSTGQKYDQLFLTNYGLINVLDELARVPGVGEAALFGRYAYS 185

Query: 187  LRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRLVNE 246
            +R+W D  K +S  L  SDVVAAI  QN Q   G++GA P P    FQ ++ TQGRL   
Sbjct: 186  MRIWFDIEKLSSLGLVPSDVVAAISAQNVQAPVGRIGARPVPDDQKFQFNLQTQGRLTKP 245

Query: 247  EEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGSNAIEIS 306
            EEF  I++RA ADG + ++ D+ARVELG+      + LN  P + I IF  PG+NAI  +
Sbjct: 246  EEFGAIVLRANADGSVLKVSDVARVELGAQNADTYARLNGDPTIGIGIFLAPGANAINTA 305

Query: 307  DEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILFLQTWR 366
              + AK+  L+  FPE +   +VYD T+FV  +I AV+HTLFEA  LV +VV LFL   R
Sbjct: 306  AAINAKLDTLRPRFPESVQARVVYDATVFVNDTISAVLHTLFEAFALVAVVVFLFLGNLR 365

Query: 367  ASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNI--G 424
            A++IP++AVPVSLIGTFAV+  FG S+N +S+  LVLAIGIVVDDAIVVVENVER +   
Sbjct: 366  ATLIPIIAVPVSLIGTFAVLIAFGTSVNTVSMLALVLAIGIVVDDAIVVVENVERVMEEE 425

Query: 425  LGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISA 484
              L P +AT+KAM++VT PIIA  LVL +VFVP  F+ G+ G+ ++QFA+TI+ + +ISA
Sbjct: 426  PELSPADATKKAMAQVTAPIIAITLVLLSVFVPIGFLPGIMGELFRQFAVTISAAMLISA 485

Query: 485  FNSLTLSPALAAVLLKDHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYVGGVRRVI 544
             N+LTLSPA+ A+ L+  H  + R   F+ K+          R  DRA   Y   VR  +
Sbjct: 486  VNALTLSPAMCALFLR--HEGQRR--GFMQKV---------GRGIDRARDGYTSTVRIAL 532

Query: 545  RSSGIALFVY----AGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEAVI 600
            R   +++       AG+ GL+     +TP+GF+P +D+       QLPD AS+ RTEA +
Sbjct: 533  RRPALSVLAVAACGAGIWGLSL----TTPSGFLPEEDQGAFFINVQLPDGASVARTEATV 588

Query: 601  KRMSEIALKQPGVADSVAFPGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAIAAAL 660
              + +I  + P V D ++  GLS+    ++ N+  +   LKPF +RK  S SA  +    
Sbjct: 589  IEVEKIVKQMPEVRDVLSIVGLSLLDNYSASNNAFMIVQLKPFADRKAASSSAQTLIGKT 648

Query: 661  NAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAKSHNVPE 720
                  ++ A +  F  PPV GL T GGF+ Q+E        A+   T  ++A  +  P 
Sbjct: 649  FGATQAVRTATVLPFNLPPVVGLSTAGGFQYQLESLEGAEPAAIAGVTNGLVAAGNQNPL 708

Query: 721  LAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGRTYQVN 780
            L  +F++Y  N P +   IDREKA++ G+ I DIF  LQ+ LG LY N+FN FGRT+QVN
Sbjct: 709  LTRVFSTYNANAPSLYLDIDREKAQSLGITINDIFSALQISLGGLYINNFNLFGRTWQVN 768

Query: 781  VQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEINGAAA 840
            +Q +   R D   +  + VRN  G M+PL +   V   +GP  +  YN + +  ING+ A
Sbjct: 769  LQGDASARRDLPNLWDIYVRNTKGAMVPLQSIATVRTVTGPAVITRYNNYRSVTINGSPA 828

Query: 841  PGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAAQ 900
            PG SSG A AA+ ++  + LP G  FEWT   YQ+  +      +  L V+ A+L L A 
Sbjct: 829  PGVSSGTAMAAMAEVSAKTLPPGYAFEWTGTAYQEHEAVGKTGYILALAVIFAYLFLVAL 888

Query: 901  YESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKD 960
            YESW +P+ V+L V + +L A  G++V     +++ QIGL+VL+ LA KN ILIVEFAK+
Sbjct: 889  YESWVIPVPVLLSVSIAVLGAFAGILVGRVTLDLYAQIGLVVLIALAAKNGILIVEFAKE 948

Query: 961  EQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAVFSGMI 1020
            ++  GL   AA     +LR R ++MTSIAFI+G+VPLV++ GA    R  +   VF+GM+
Sbjct: 949  QREAGLSIKAAAEMGAKLRFRAVMMTSIAFILGLVPLVWADGAAMLARRNLSTPVFAGML 1008

Query: 1021 GVTVFGLFLTPVFFFLIRRFVER 1043
              ++ G+ L P+ + + +   E+
Sbjct: 1009 TASLIGIILIPMLYVVFQSLREK 1031



 Score = 62.8 bits (151), Expect = 1e-13
 Identities = 83/359 (23%), Positives = 140/359 (38%), Gaps = 36/359 (10%)

Query: 710  NIIAKSHNVPEL--AGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYT 767
            N++ +   VP +  A LF  Y  ++       D EK  + G+  +D+   +         
Sbjct: 162  NVLDELARVPGVGEAALFGRYAYSMR---IWFDIEKLSSLGLVPSDVVAAISAQ------ 212

Query: 768  NDFNRFGRTYQVNVQAEQQFRLDAEQIGQLKVRNNLGEMIPLA----TFLKVSDTS---- 819
            N     GR     V  +Q+F+ + +  G+L      G ++  A    + LKVSD +    
Sbjct: 213  NVQAPVGRIGARPVPDDQKFQFNLQTQGRLTKPEEFGAIVLRANADGSVLKVSDVARVEL 272

Query: 820  ---GPDRVMHYNGFITAEINGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQI 876
                 D     NG  T  I    APG ++    AAI   L    P         + Y   
Sbjct: 273  GAQNADTYARLNGDPTIGIGIFLAPGANAINTAAAINAKLDTLRPRFPESVQARVVYDAT 332

Query: 877  LSGN--------TALLVFPLCVLLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVIVS 928
            +  N        T    F L  ++ FL L     +    L  I+ VP++L+     +I  
Sbjct: 333  VFVNDTISAVLHTLFEAFALVAVVVFLFLG----NLRATLIPIIAVPVSLIGTFAVLIAF 388

Query: 929  GGDNNIFTQIGLIVLVGLACKNAILIVEFAKD--EQAKGLDPLAAVLEACRLRLRPILMT 986
            G   N  + + L++ +G+   +AI++VE  +   E+   L P  A  +A      PI+  
Sbjct: 389  GTSVNTVSMLALVLAIGIVVDDAIVVVENVERVMEEEPELSPADATKKAMAQVTAPIIAI 448

Query: 987  SIAFIMGVVPLVFSSGAGSEMRHAMGVAVFSGMIGVTVFGLFLTPVFFFLIRRFVERRQ 1045
            ++  +   VP+ F  G   E+     V + + M+   V  L L+P    L  R   +R+
Sbjct: 449  TLVLLSVFVPIGFLPGIMGELFRQFAVTISAAMLISAVNALTLSPAMCALFLRHEGQRR 507