Pairwise Alignments

Query, 1059 a.a., Multidrug efflux RND transporter MexF from Pseudomonas putida KT2440

Subject, 1048 a.a., putative cation efflux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  920 bits (2377), Expect = 0.0
 Identities = 484/1049 (46%), Positives = 687/1049 (65%), Gaps = 15/1049 (1%)

Query: 3    FSKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGET 62
            FSKFFI RPIFA VL+L++++AG ++L  LP++++PE+ PPTV V A +PGAN + + +T
Sbjct: 2    FSKFFINRPIFATVLALLIVVAGLVALNILPVAQFPEITPPTVQVSAVYPGANAETVAQT 61

Query: 63   VAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKLPE 122
            V  P+EQ + GV+ MLYMSS S++ G  +LTITFA+GTD+D A VQVQNRV+  Q  LPE
Sbjct: 62   VGLPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQNRVSVAQSSLPE 121

Query: 123  EVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGM 182
             V   G+TV K S ++ M + +TS D+ Y+ LYL+NYA LN+ D+L+R+ GVG V + G 
Sbjct: 122  PVVVQGVTVQKQSSNIVMFLTMTSKDSVYNSLYLTNYAKLNLVDQLSRVPGVGAVNVMGA 181

Query: 183  GDYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGS-TSFQLSINTQG 241
            GDYS+R+WLDP     RN++ + V  +I+ QN +V+AG +G P    +  +FQ ++N QG
Sbjct: 182  GDYSMRIWLDPEAMRIRNISPAQVYQSIQSQNMEVSAGYIGQPIGQDNKNAFQYTLNVQG 241

Query: 242  RLVNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGSN 301
            RL++ E+F NIIIR   DG + RLKDIAR++LGS+ Y++ S L   P  AI I+Q+PGSN
Sbjct: 242  RLISPEQFGNIIIRREQDGAMLRLKDIARIDLGSASYSVVSRLKGMPTAAIAIYQQPGSN 301

Query: 302  AIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILF 361
            ++++S  V+AKM EL   FP G+ Y++  D T  +  SI+ V+ T FE  +LVVLV+ LF
Sbjct: 302  SLDVSKGVKAKMEELATSFPTGVAYNVTLDTTDVIHASIDEVMVTFFETTLLVVLVIFLF 361

Query: 362  LQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVER 421
            LQ WRA IIP + +PVSLIGT AVM  FGFS+N L+LFGL+LA+ IVVDDAIVVVEN  R
Sbjct: 362  LQNWRAVIIPCITIPVSLIGTLAVMAAFGFSINTLTLFGLILAVAIVVDDAIVVVENASR 421

Query: 422  NIGLG-LKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAIST 480
             +  G     EA  KAM E+TGPI+   LVL AVF+P   ISG++GQ YKQFALTIA ST
Sbjct: 422  LLETGQYSTREAVTKAMGEITGPIVGVVLVLLAVFIPTMMISGISGQLYKQFALTIAAST 481

Query: 481  VISAFNSLTLSPALAAVLLKDHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYVGGV 540
            V+S FNSLTL+PAL A+ LK     K + S F       +++  FN+ +D+    Y   V
Sbjct: 482  VLSGFNSLTLTPALCALFLK-----KSKPSNF-------FIYKGFNKAYDKTQGVYDSTV 529

Query: 541  RRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEAVI 600
            + +++   I+   +A L  +  + F   P+ F+P +D  Y +A  QLP AASL+RT+AV 
Sbjct: 530  KWLLQRPLISFVSFAILTVIAVILFMRWPSTFIPDEDDGYFIAVVQLPPAASLERTQAVG 589

Query: 601  KRMSEIALKQPGVADSVAFPGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAIAAAL 660
             +++ I    P V + +   G S+ G     NS   F  LK +DERK    +AAA+    
Sbjct: 590  DKINAILDSYPEVENYIGITGFSVMGGGEQSNSATYFVVLKNWDERKGKEHTAAAVVDRF 649

Query: 661  NAQ-FADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAKSHNVP 719
            N + + +IQ        PP + GLG  GG +LQ+EDR NLG   + +    ++A SH+ P
Sbjct: 650  NGEAYMEIQAGQAFAMVPPAIPGLGASGGLQLQLEDRRNLGPTEMQQAIDALLASSHSKP 709

Query: 720  ELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGRTYQV 779
             LA + + YQ NVPQ    IDR+K +  G+A+ D+F TL  Y+G+ Y NDF  FG  YQV
Sbjct: 710  ALASVSSQYQANVPQYFLNIDRDKVQFMGIALNDVFSTLSYYMGAAYVNDFVEFGHIYQV 769

Query: 780  NVQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEINGAA 839
             ++A  Q +   + + +L V N+ GEM+PL++F KV +  G D++  YN + TA +    
Sbjct: 770  KIEARDQAQRVIDDVLKLSVANSAGEMVPLSSFTKVEEQLGQDQINRYNMYSTAALTCNV 829

Query: 840  APGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAA 899
            APG SSGQA   +E L KE+L +   +EWT + YQ+  +GNT  +V  + +++AFLVLAA
Sbjct: 830  APGSSSGQAIQEMETLFKEQLGDEFGYEWTSVAYQETQAGNTTTIVLVMALIVAFLVLAA 889

Query: 900  QYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAK 959
            QYESW+ P+A ++ +P+ LL A+ G ++ G   +++TQIG+I+LV L+ KN ILIVEFA+
Sbjct: 890  QYESWTSPVAAVIGLPVALLGAMIGCMIMGTPVSVYTQIGIILLVALSAKNGILIVEFAR 949

Query: 960  DEQAKGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAVFSGM 1019
            D +A+G     A  EA  +RLRPILMTS AF++GV+PL+F++GAG++ R A+G AV  GM
Sbjct: 950  DFRAEGNSIREAAYEAGHVRLRPILMTSFAFVLGVMPLLFATGAGAQSRIALGTAVVFGM 1009

Query: 1020 IGVTVFGLFLTPVFFFLIRRFVERRQARK 1048
               T+      P F+ L+++  E+   +K
Sbjct: 1010 AMNTLLATVYIPNFYELMQKLQEKFSRKK 1038