Pairwise Alignments

Query, 403 a.a., Type II secretion pathway protein XcpS from Pseudomonas putida KT2440

Subject, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

 Score =  172 bits (436), Expect = 2e-47
 Identities = 128/404 (31%), Positives = 210/404 (51%), Gaps = 16/404 (3%)

Query: 6   AAMRY-SLKALGR--QGVVQLQIDAEDADQARRQAEDQGLRVLSL-----RSSGGALRGM 57
           AA  Y +L A GR  +GV    I+ ++A Q R++ ++Q L  + +     +++    +G 
Sbjct: 2   AAFEYKALDAKGRHKKGV----IEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGF 57

Query: 58  AWRREAAF-DLVLFSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQLYEGRS 116
           A++R  +  DL L +++L+TL+ +G+PL + L ++AE+S     R +L  +  ++ EG +
Sbjct: 58  AFKRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYT 117

Query: 117 LSQALGQQPRVFPPLYVALVQSSERTGALGDALTRYISYRQRLDLVRQKLVGASVYPLLL 176
           LS +LG  P VF  L+ ++V + E++G L   L R   Y +    +R KL  A +YP++L
Sbjct: 118 LSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVL 177

Query: 177 LLVGGGVVLFLLGYVVPRFSQVFEGMGTELPWLSRVLMQVGLFLHAQQAPLALGTVGGVA 236
           ++   G+V FLL  VVP+    F  MG  LP  ++ L+    FL      L +G +  + 
Sbjct: 178 VVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIY 237

Query: 237 AL-WLLRRHPRVRYWASCQLRRLPALHQRLMMYELARFYRSLGILLQGGIPILTAMGMAR 295
            + WLL + P +R     ++  LP + +       ARF R+L I     IPIL  M +A 
Sbjct: 238 LVRWLLTK-PDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAV 296

Query: 296 GLLGNA-AAQGLEQASQRVGEGLPLSDALAAGHLVTPVSLRLLRAGEQSGNLGEMLERCA 354
            ++ N    Q +  A++ V EG  L  AL    L  P+ L ++ +GEQSG L  ML R A
Sbjct: 297 DVMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAA 356

Query: 355 DFHDQEIGRWVEWFVKLFEPLLMTFIGLLIGLIVILMYMPIFEL 398
           D  D      V   + +F P L+  +  ++  IV+   MPI E+
Sbjct: 357 DNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEM 400